1havA - reference 1


Name                 hepatitis proteinase							

Number of sequences              5
Alignment Length                 245
Longest Sequence                 199
Shortest Sequence                136
Average Percent Identity         15
Maximum Percent Identity         20
Minimum Percent Identity         11

Sequence Name    SWISSPROT Accession
1havA                P06441         
1agjA                P09331         
5ptp                 P00760         
2sga                 P00776         
1svpA                P27285         

Family   1havA 1agjA 5ptp 2sga 1svpA


1havA        1  .knlvqfgvgeknGSVRWVmnalgvk.ddwLLVPSHAykfekdyemmefy
1agjA        1  .ntignvfvk...GQTSATgvlig...kntVLTNRHIakfa.ngdpskvs
5ptp         1  .pyqvslns....GYHFCGgslin...sqwVVSAAHCy.......ksgiq
2sga         1  iaggeaitt...gGSRCSLgfnvsvngvahALTAGHCtnis.......as
1svpA        1  .drlfdvkne..dGDVIGHalame....gkVMKPLHVk..........gt

1havA       49  fnrg.............gtyysisag.nvviqsldvgf...qDVVLMKVp
1agjA       43  frpsintddngntetpygeye.....vkeilqepfgag...vDLALIRLk
5ptp        36  vrlgedninvvegn.....eqfisa.sksivhpsynsntlnnDIMLIKLk
2sga        41  wsi......................gtrtgtsfp......nnDYGIIRHs
1svpA       34  idhp..................vlsklkftkssa.......yDMEFAQL.

1havA       82  t......ipkfrd....itqhfikkgdvpral.nrlatlvttvng.....
1agjA       85  pdqngvslgdkisp........akigtsndlkdgdkleligypfdhkv..
5ptp        80  s......aaslnsrvasis.....lptscasa.gtqclisgwgntkssgt
2sga        63  n......paaadgrvylyngsyqdittagnafvgqavqrsgst.......
1svpA       58  .......pvnmrseaf........tyts..ehpe...gfynwh.......

1havA      116  ..tpmlisegplkmeekatyvhkkndgttvdltvdqawrgk.....gegl
1agjA      125  ..nqmhrseiel...............ttlsr....glryy.....gftv
5ptp       118  sypdvlkclkapilsdsscksayp...gqit...snmfcagyleggkdsc
2sga       100  ...tglrsgsvtglnatvn........ygssgivygmiqtn.....vcaq
1svpA       81  .....hgavqysgg....................rftiprg.....vggr

1havA      159  pGMCGGALVSSnqsiqnAILGIHVAGgn......silvaklvt..
1agjA      149  pGNSGSGIFNS....ngELVGIHSSKvshldrehqinygvgigny
5ptp       162  qGDXGGPVVCS.....gKLQGIVSWGsg.caqknkpgvytkvcn.
2sga       134  pGDSGGSLFAG.....sTALGLTSGGsg.ncrtggttfyqpvte.
1svpA      101  .GDAGRPIMDN....sgRVVAIVLGGad...egtrtalsvvtwn.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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