1csp - reference 4


Name                 major cold shock protein

Number of sequences              6
Alignment Length                 1003
Longest Sequence                 711
Shortest Sequence                67
Average Percent Identity         32
Maximum Percent Identity         60
Minimum Percent Identity         14

Sequence Name    SWISSPROT Accession
grp2_nicsy           P27484         
cspd_haein           P46449         
1csp                 P32081         
1mjc                 P15277         
RHO_ECOLI            P03002         
PNP_ECOLI            P05055         

Family   grp2_nicsy cspd_haein 1csp 1mjc RHO_ECOLI PNP_ECOLI


grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI    1  mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkka

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI   51  kpgqdffpltvnyqertyaagripgsffrregrpsegetliarlidrpir

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  101  plfpegfvnevqviatvvsvnpqvnpdivamigasaalslsgipfngpig

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  151  aarvgyindqyvlnptqdelkeskldlvvagteaavlmveseaqllsedq

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  201  mlgavvfgheqqqvviqninelvkeagkprwdwqpepvnealnarvaala

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  251  earlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  301  eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqa

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  351  lvtatlgtardaqvldelmgertdtflfhynfppysvgetgmvgspkrre

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  401  ighgrlakrgvlavmpdmdkfpytvrvvseitesngsssmasvcgaslal

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  451  mdagvpikaavagiamglvkegdnyvvlsdilgdedhlgdmdfkvagsrd

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  ..................................................
PNP_ECOLI  501  gisalqmdikiegitkeimqvalnqakgarlhilgvmeqainaprgdise

grp2_nicsy   1  ..................................................
cspd_haein   1  ..................................................
1csp         1  ..................................................
1mjc         1  ..................................................
RHO_ECOLI    1  .........................mnltelkntpvselitlgenmglen
PNP_ECOLI  551  faprihtikinpdkikdvigkggsviralteetgttieieddgtvkiaat

grp2_nicsy   1  ..........................kgtvkwfsdqkGFGFItpdd....
cspd_haein   1  ........................meigivkwfnnakGFGFIsaeg....
1csp         1  ........................mlegkvkwfnsekGFGFIeve.....
1mjc         1  ......................sgkmtgivkwfnadkGFGFItpdd....
RHO_ECOLI   26  larmrkqdiifailkqhaksgedifgdgvleil..qdGFGFLrsadssyl
PNP_ECOLI  601  dgekakhairrieeitaeievgrvytgkvtriv....DFGAFvaig....

grp2_nicsy  21  .ggeDLFVhqsgirsegf....rslaegetvefevesggdg..rtkavdv
cspd_haein  23  .vdaDIFAhysviemdgy....rslkagqkvqfevlhsdkg...shatki
1csp        22  .gqdDVFVhfsaiqgegf....ktleegqavsfeivegnrg...pqaanv
1mjc        25  .gskDVFVhfsaiqndgy....ksldegqkvsftiesgakg...paagnv
RHO_ECOLI   74  agpdDIYVspsqirrf.......nlrtgdtisgkirppkegeryfallkv
PNP_ECOLI  643  .ggkEGLVhisqiadkrvekvtdylqmgqevpvkvlevdrqg..rirlsi

grp2_nicsy  64  tgpd..............................................
cspd_haein  65  ipiadtqe..........................................
1csp        64  tkea..............................................
1mjc        67  tsl...............................................
RHO_ECOLI  117  nevnfdkpenarnkilfenltplhansrlrmergngstedltarvldlas
PNP_ECOLI  690  keateqsqpaaapeapaaeqge............................

grp2_nicsy  68  ..................................................
cspd_haein  73  ..................................................
1csp        68  ..................................................
1mjc        70  ..................................................
RHO_ECOLI  167  pigrgqrglivappkagktmllqniaqsiaynhpdcvlmvlliderpeev
PNP_ECOLI  712  ..................................................

grp2_nicsy  68  ..................................................
cspd_haein  73  ..................................................
1csp        68  ..................................................
1mjc        70  ..................................................
RHO_ECOLI  217  temqrlvkgevvastfdepasrhvqvaemviekakrlvehkkdviillds
PNP_ECOLI  712  ..................................................

grp2_nicsy  68  ..................................................
cspd_haein  73  ..................................................
1csp        68  ..................................................
1mjc        70  ..................................................
RHO_ECOLI  267  itrlarayntvvpasgkvltggvdanalhrpkrffgaarnveeggsltii
PNP_ECOLI  712  ..................................................

grp2_nicsy  68  ..................................................
cspd_haein  73  ..................................................
1csp        68  ..................................................
1mjc        70  ..................................................
RHO_ECOLI  317  atalidtgskmdeviyeefkgtgnmelhlsrkiaekrvfpaidynrsgtr
PNP_ECOLI  712  ..................................................

grp2_nicsy  68  ..................................................
cspd_haein  73  ..................................................
1csp        68  ..................................................
1mjc        70  ..................................................
RHO_ECOLI  367  keellttqeelqkmwilrkiihpmgeidameflinklamtktnddffemm
PNP_ECOLI  712  ..................................................

grp2_nicsy  68  ...
cspd_haein  73  ...
1csp        68  ...
1mjc        70  ...
RHO_ECOLI  417  krs
PNP_ECOLI  712  ...

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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