1pfc - reference 4


Name                 immunoglobulin PFc fragment

Number of sequences              10
Alignment Length                 374
Longest Sequence                 362
Shortest Sequence                111
Average Percent Identity         16
Maximum Percent Identity         36
Minimum Percent Identity         9

Sequence Name    SWISSPROT Accession
1pfc                 P01862         
1ige                 P01854         
1yuh                 P01726         
1mim                 P01834         
1nld                 P01864         
1frt                 P07151         
1mcp                 P01789         
1iea                 P04230         
CD11_MOUSE           P11609         
1B04_HUMAN           P30460         

Family   1pfc 1ige 1yuh 1mim 1nld 1frt 1mcp 1iea CD11_MOUSE 1B04_HUMAN


1pfc         1  ..................................................
1ige         1  ..................................................
1yuh         1  ..................................................
1mim         1  ..................................................
1nld         1  ..................................................
1frt         1  ...........................aeprlplmyhlaavsdlstglps
1mcp         1  ..................................................
1iea         1  ..................................................
CD11_MOUSE   1  ..mrylpwlllwaflqvwgqseaqqknytfrclqmssfanrswsrtdsvv
1B04_HUMAN   1  mlvmaprtvllllsaalaltetwagshsmryfdtamsrpgrgeprfisvg

1pfc         1  ..................................................
1ige         1  ..................................................
1yuh         1  ............................................avvtqe
1mim         1  .................................................q
1nld         1  ........................................qvklqqsgpg
1frt        24  fwatgwlgaqqyltynnlrqeadpcgawiwenqvswywekettdlkskeq
1mcp         1  ...............................evklvesggglvqpggslr
1iea         1  .....................................gkkvitafneglk
CD11_MOUSE  49  wlgdlqthrwsndsatisftkpwsqgklsnqqweklqhmfqvyrvsftrd
1B04_HUMAN  51  yvddtqfvrfdsdaaspreeprapwieqegpeywdrntqifktntqtdre

1pfc         1  ..................................................
1ige         1  ................................................nh
1yuh         7  salttspgetvtltcrsstgavttsnyanwvqekpdrlftgliggtnnrg
1mim         2  ivstqspaimsaspgekvtmtcsasssrsymqwyqqkpgtspkrwiydts
1nld        11  lvqpsqslsitctvsgfsltcygvhwvrqspgkglewlgviwsggdtdyn
1frt        74  lfleairtlenqingtftlqgllgcelapdnsslptavfalngeefmrfn
1mcp        20  lscatsgftfsdfymewvrqppgkrlewiaasrnkgnkytteysasvkgr
1iea        14  ggggslvgggsggggsrpwfleycksechfyngtqrvrllvryfynleen
CD11_MOUSE  99  iqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvvrfwg
1B04_HUMAN 101  slrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydgkdyial

1pfc         1  ..............................................rtis
1ige         3  strkeekqrngtltvtstlpvgtrdwiegetyqcrvthphlpralmrstt
1yuh        57  pgvparfsgsligdkaaltitgaqtedeaiyfcalwysnhwvfgggtklt
1mim        52  klasgvparfsgsgsgtsysltissmeaedaatyychqrssytfgggtkl
1nld        61  aafisrlsitkdnsksqvffkmnslqpndraiyycarrggdfwgqgttvt
1frt       124  prtgnwsgewpetdivgnlwmkqpeaarkeseflltscperllghlergr
1mcp        70  fivsrdtsqsilylqmnalraedtaiyycarnyygstwyfdvwgagttvt
1iea        64  lrfdsdvgefravtelgrpdaenwnsqpefleqkraevdtvcrhnyeifd
CD11_MOUSE 149  tswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
1B04_HUMAN 151  nedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengk

1pfc         5  kakgppri.pevyllppprnelskkkvsLTCMITGFYP.adINVEWdsse
1ige        53  ktsgpraa.pevyafatpewpgsrdkrtLACLIQNFMP.edISVQWlhne
1yuh       107  vlgqpkss.psvtlfppsseeletnkatLVCTITDFYP.gvVTVDWkvdg
1mim       102  eikrtvaa.psvfifppsdeqlksgtasVVCLLNNFYP.reAKVQWkvdn
1nld       111  vssastta.psvyplapvsgdqtnssvtLGCLVKGYFP.epVTLTWns.g
1frt       174  qnlewkep.psmrlkarp...gnsgssvLTCAAFSFYP.peLKFRFlrng
1mcp       120  vssesarn.ptiypltlp.palssdpviIGCLIHDYFPsgtMNVTWgksg
1iea       114  nflvprrveptvtvyptktqplehh.nlLVCSVSDFYP.gnIEVRWfrng
CD11_MOUSE 199  sdlekqek.pvawlssvpssadghr..qLVCHVSGFYP.kpVWVMWmr.g
1B04_HUMAN 201  dtleradp.pkthvthhp...isdheatLRCWALGFYP.aeITLTWqrdg

1pfc        53  .ps....dykntppvfdtdgsFFLYSRLKVdtdawnngesFTCSVMHEal
1ige       101  vqlpda.rhsttqprktkgsgFFVFSRLEVtraeweqkdeFICRAVHEaa
1yuh       155  tpvteg..mettqpskqsnnkYMASSYLTLsarawerhasYSCQVTHEg.
1mim       150  .alqsgnsqesvteqdskdstYSLSSTLTLskadyekhkvYACEVTHQgl
1nld       158  .slssg..vhtfpavlqsd.lYTLSSSVTVtsspw.psetITCNVAHPas
1frt       219  ..lasg..sgncstgpngdgsFHAWSLLEVkrgd...ehhYQCQVEHEgl
1mcp       168  kdit....tvnfppalasggrYTMSNQLTLpavecpegesVKCSVQHDsn
1iea       162  keektg..ivstglvrngdwtFQTLVMLETvpqs...gevYTCQVEHPsl
CD11_MOUSE 244  dqeqqg..thrgdflpnadetWYLQATLDVeage...eagLACRVKHSsl
1B04_HUMAN 246  edqtqd..telvetrpagdrtFQKWAAVVVpsge...eqrYTCHVQHEgl

1pfc        98  .pnhviqksisrspg...................................
1ige       150  spsqtvqravsvnpgk..................................
1yuh       202  ...htvekslsra.....................................
1mim       199  ..sspvtksfnrge....................................
1nld       203  ..stkvdkkieprgc...................................
1frt       262  ..aqpltvdl........................................
1mcp       214  .pvqeldvnc........................................
1iea       207  ..tdpvtvew........................................
CD11_MOUSE 289  .ggqdiilywdarqapvglivfivlimlvvvgavvyyiwrrrsayqdir.
1B04_HUMAN 291  ..pkpltlrwepssqstvpivgivaglavlavvvigavvaavmcrrkssg

1pfc       112  ........................
1ige       166  ........................
1yuh       212  ........................
1mim       211  ........................
1nld       216  ........................
1frt       270  ........................
1mcp       223  ........................
1iea       215  ........................
CD11_MOUSE 337  ........................
1B04_HUMAN 339  gkggsysqaacsdsaqgsdvslta

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

Back to Index