1fmb - reference 1


Name                 hiv-1 protease	

Number of sequences              4
Alignment Length                 106
Longest Sequence                 104
Shortest Sequence                98
Average Percent Identity         49
Maximum Percent Identity         86
Minimum Percent Identity         35

Sequence Name    SWISSPROT Accession
1fmb                 P32542         
7upjB                P03366         
pol_sivcz            P17283         
POL_SIVMK            P05897         

Family   1fmb 7upjB pol_sivcz POL_SIVMK


1fmb         1  vTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLTTahynrlkyrgrk.YQ
7upjB        1  pQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAG.....iel.gnn.YS
pol_sivcz    1  pQITLWQRPLIPVKVEGQLCEALLDTGADDTVIER.....iqlqgl..WK
POL_SIVMK    1  pQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTG.....iel.gph.YT

1fmb        50  GTGIGGVGGNVETFS.TPVTIKKKGRHIKTRMLVADIPVTILGRDILQDL
7upjB       44  PKIVGGIGGFINTLEYKNVEIEVLNKKVRATIMTGDTPINIFGRNILTAL
pol_sivcz   44  PKMIGGIGGFIKVKQFDNVHIEIEGRKVVGTVLVGPTPVNIIGRNILTQL
POL_SIVMK   44  PKIVGGIGGFINTKEYKNVEIEVLGKRIKRTIMTGDTPINIFGRNLLTAL

1fmb        99  GAKLVl
7upjB       94  GMSLNl
pol_sivcz   94  GCTLV.
POL_SIVMK   94  GMSLNl

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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