1pamA - reference 1
Name cyclodextrin
Number of sequences 5
Alignment Length 678
Longest Sequence 572
Shortest Sequence 435
Average Percent Identity 18
Maximum Percent Identity 21
Minimum Percent Identity 15
Sequence Name SWISSPROT Accession
1pamA P05618
1smd P04745
1jdc P13507
1bf2 P10342
1vjs P06278
Family 1pamA 1smd 1jdc 1bf2 1vjs
1pamA 1 .tdviyqiftdrfsdgnpannptgaafdgsctnlrlycggdWQGIInkin
1smd 1 grtsivhlfewr.............................WVDIAlec.
1jdc 1 gdeiilqgfhwnvvreapn.....................dWYNILrqq.
1bf2 1 ..dviyevhvrgfteqdts..............ipaqyrgtYYGAGlk..
1vjs 1 lngtlmqyfewympn......................dgqhWKRLQnd..
1pamA 50 dgyLTGMGITAI.wisqpveniysviny.sgvnntayhgywardfkkt..
1smd 21 eryLAPKGFGGV.qvsppnenvaih....npfrp.wwery.qpvsykl..
1jdc 29 aatIAADGFSAI.wmpvpwrdfsswsd..gsksg.ggegyfwhdfnk...
1bf2 33 asyLASLGVTAVeflpvqetqndandvvpnsdanqnywgymtenyfspdr
1vjs 27 sayLAEHGITAV.wippaykg........tsqad...vgygaydlydlge
1pamA 96 .......npayGTMQDFKNLIDTAHAHNIKVIIDFAPNHtspassddpsf
1smd 62 .......ctrsGNEDEFRNMVTRCNNVGVRIYVDAVINHmcgnavsagts
1jdc 72 .......ngryGSDAQLRQAASALGGAGVKVLYDVVPNHmnrg.......
1bf2 83 ryay..nkaagGPTAEFQAMVQAFHNAGIKVYMDVVYNHtaeggtwtssd
1vjs 65 fhqkgtvrtkyGTKGELQSAIKSLHSRDINVYGDVVINHkggadatedvt
1pamA 139 aengrlydng.nllggytndtqnlfhhygg....................
1smd 105 stcgsyfnpgsrdfpavpysgwdfndgkcktgsgdi..............
1jdc 108 ......ypd..kein.lp.agqgfwrndcadp..................
1bf2 131 pttatiy.............swrgldnatyye..................
1vjs 115 avevdpadrnrvisgehlikawthfhfpgrgstysdfkwhwyhfdgtdwd
1pamA 168 tdfstiengiykn....lydlaDLNHNNSSVDVYLKDaikmwl.dLGVDG
1smd 141 enyndatqvrdcr....lsgllDLALGKDYVRSKIAEymnhli.dIGVAG
1jdc 130 gnypndcddgdrf....iggdaDLNTGHPQVYGMFRDeftnlrsqYGAGG
1bf2 150 ltsgnqyfy.dnt.....gigaNFNTYNTVAQNLIVDslaywantMGVDG
1vjs 165 esrklnriykfqgkaydylmyaDIDYDHPDVAAEIKRwgtwyaneLQLDG
1pamA 213 IRVDAVkhmp...........................fgwqksfmatinn
1smd 186 FRIDASkhmw...........................pgdikaildklhn
1jdc 176 FRFDFVrgya...........................pervnswmtds..
1bf2 194 FRFDLAsvlgnsclngaytasapncpnggynfdaadsnvainrilreftv
1vjs 215 FRLDAVkhik...........................fsflrdwvnhvre
1pamA 236 yk........pvFTFGEWflgvnei.........speyhqfanes..gms
1smd 209 lnsnwfpegskpFIYQEVidlg...........gepikssdyfg...ngr
1jdc 197 ........adnsFCVGQLwkgpseypnwdwrntaswqqiikdwsdrakcp
1bf2 244 rpaag...gsglDLFAEPwaig..........gnsyqlggfpq....gws
1vjs 238 kt......gkemFTVAEYwqnd............lgalenylnktnfnhs
1pamA 267 lldfrfaqkarqvfrdnt...dnmyglkamlegsevdya....qvndqvT
1smd 245 vtefkygaklgtvirkwn..gekmsylknwgegwgfm......psdralV
1jdc 239 vfdfalkermqn.........gsiadwkhglngnpd.....prwrevavT
1bf2 277 ewnglfrdslrqaqnelgsmtiyvtqdandfsgssnlfqssgrspwnsiN
1vjs 270 vfdvplhyqfhaastqgg..gydmrklln..stvvsk......hplkavT
1pamA 310 FIDNHDMer.................................fht.....
1smd 287 FVDNHDNqr............................ghgaggasil...
1jdc 275 FVDNHDTgy............................spgqnggqhh...
1bf2 327 FIDVHDGmtlkdvyscngannsqawpygpsdggtstnyswdqgmsagtga
1vjs 310 FVDNHDTqp............................g.qslestvq...
1pamA 322 sngdrrkleqALAFTLTSr.GVPAIYYGseqymsgg........ndpdnr
1smd 306 tfwdarlykmAVGFMLAHpyGFTRVMSSyrwpryfengkdvndwvgppnd
1jdc 294 walqdglirqAYAYILTSp.GTPVVYWDhmydwg................
1bf2 377 avdqrraartGMAFEMLSa.GTPLMQGGdeylr.........tlqcnnna
1vjs 328 twf....kplAYAFILTResGYPQVFYGdmygtkgdsqreip........
1pamA 363 ar............lpsfsttttayqvIQKLAPLRKsn.....paiaygs
1smd 356 ngvtkevtinpdttcgndwvcehrwrqIRNMVNFRNvv........dgqp
1jdc 327 .......................ygdfIRQLIQVRRaa......gvrads
1bf2 417 yn..ldssan.wltyswttdqsnfytfAQRLIAFRKahpalrpsswysgs
1vjs 366 ......................alkhkIEPILKARKq........yayga
1pamA 396 therwin..............ndviiyerkf.....gnnVAVVAINrnmn
1smd 398 ftnwydng.............snqvafgr.......gnrGFIVFNNd..d
1jdc 348 aisfhsgy.............sglvatvsg......sqqTLVVALN....
1bf2 464 qltwyqpsgavadsnywnntsnyaiayaingpsl.gdsnSIYVAYN...g
1vjs 386 qhdyfdh..............hdivgwtregdssvansgLAALITDgp.g
1pamA 427 tpasitglvtsLPRGS.YNDVLGgiln.....gntLTVGAGGaa.....s
1smd 426 wtfsltl.qtgLPAGT.YCDVISgdkingnctgikIYVSDDG......ka
1jdc 375 ..sdlgn.pgqVASGS.FSEAVNasn.....gqvrVWRSGTGsgggepga
1bf2 510 wsssvtftlpaPPSGTQWYRVTDtcdwndgastfvAPGSETLig......
1vjs 421 gakrmyv.grqNAGET.WHDITGnrs.......epVVINSEG........
1pamA 466 nftlap...ggtavwqyttdattpiign
1smd 468 hfsisns..aedpfiaihaeskl.....
1jdc 416 lvsvsfr..cdngatqmgdsvy......
1bf2 554 gagttygq.cgqsllllisk........
1vjs 454 .wgefhvnggsvsiyvq...........
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
Back to Index