1amk - reference 1


Name                 Triose phosphate isomerase

Number of sequences              5
Alignment Length                 258
Longest Sequence                 254
Shortest Sequence                242
Average Percent Identity         49
Maximum Percent Identity         66
Minimum Percent Identity         43

Sequence Name    SWISSPROT Accession
1amk                 P48499         
1timA                P00940         
1htiB                P00938         
1tri                 P04789         
1tmhD                P04790         

Family   1amk 1timA 1htiB 1tri 1tmhD


1amk         1  .sakpqPIAAANWKCNGTTASIEKLVQVFNEHtis.hdVQCVVAPTFVHI
1timA        1  ..art.FFVGGNFKLNGSKQSIKEIVERLNTAsip.enVEVVICPPATYL
1htiB        1  apsrk.FFVGGNWKMNGRKQSLGELIGTLNAAkvp.adTEVVCAPPTAYI
1tri         1  ..skpqPIAAANWKCNGSQQSLSELIDLFNSTsin.hdVQCVVASTFVHL
1tmhD        1  ..mrh.PLVMGNWKLNGSRHMVHELVSNLRKElagvagCAVAIAPPEMYI

1amk        49  PLVQAKLRNPKYVISAENAiak.sgaftgevSMPILKDIGVHWVILGHSE
1timA       47  DYSVSLVKKPQVTVGAQNAylkasgaftgenSVDQIKDVGAKWVILGHSE
1htiB       49  DFARQKLD.PKIAVAAQNCykvtngaftgeiSPGMIKDCGATWVVLGHSE
1tri        48  AMTKERLSHPKFVIAAQNAgn........adALASLKDFGVNWIVLGHSE
1tmhD       48  DMAKREAEGSHIMLGAQNVdlnlsgaftgetSAAMLKDIGAQYIIIGHSE

1amk        98  RRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQT
1timA       97  RRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQL
1htiB       98  RRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQT
1tri        90  RRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQI
1tmhD       98  RRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQI

1amk       148  SAIAAKLtkdaWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSEN
1timA      147  NAVLEEVk..dWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASK
1htiB      148  KVIADNVk..dWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSN
1tri       140  AAIAKKLkkadWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSK
1tmhD      148  DAVLKTQgaaaFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA.K

1amk       198  IGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPEFRDIID
1timA      195  LGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIIN
1htiB      196  VSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIIN
1tri       190  IGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIK
1tmhD      197  VDANIAEQVIIQYGGSVNASNAAELFAQHDVDGFLVGGASLKPEFVDIIN

1amk       248  ATR.....
1timA      245  SRN.....
1htiB      246  AKQ.....
1tri       240  ATQ.....
1tmhD      247  AAEaakqa

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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