1pamA - reference 1


Name                 cyclodextrin 														

Number of sequences              5
Alignment Length                 678
Longest Sequence                 572
Shortest Sequence                435
Average Percent Identity         18
Maximum Percent Identity         21
Minimum Percent Identity         15

Sequence Name    SWISSPROT Accession
1pamA                P05618         
1smd                 P04745         
1jdc                 P13507         
1bf2                 P10342         
1vjs                 P06278         

Family   1pamA 1smd 1jdc 1bf2 1vjs


1pamA        1  .tdviyqiftdrfsdgnpannptgaafdgsctnlrlycggdWQGIInkin
1smd         1  grtsivhlfewr.............................WVDIAlec.
1jdc         1  gdeiilqgfhwnvvreapn.....................dWYNILrqq.
1bf2         1  ..dviyevhvrgfteqdts..............ipaqyrgtYYGAGlk..
1vjs         1  lngtlmqyfewympn......................dgqhWKRLQnd..

1pamA       50  dgyLTGMGITAI.wisqpveniysviny.sgvnntayhgywardfkkt..
1smd        21  eryLAPKGFGGV.qvsppnenvaih....npfrp.wwery.qpvsykl..
1jdc        29  aatIAADGFSAI.wmpvpwrdfsswsd..gsksg.ggegyfwhdfnk...
1bf2        33  asyLASLGVTAVeflpvqetqndandvvpnsdanqnywgymtenyfspdr
1vjs        27  sayLAEHGITAV.wippaykg........tsqad...vgygaydlydlge

1pamA       96  .......npayGTMQDFKNLIDTAHAHNIKVIIDFAPNHtspassddpsf
1smd        62  .......ctrsGNEDEFRNMVTRCNNVGVRIYVDAVINHmcgnavsagts
1jdc        72  .......ngryGSDAQLRQAASALGGAGVKVLYDVVPNHmnrg.......
1bf2        83  ryay..nkaagGPTAEFQAMVQAFHNAGIKVYMDVVYNHtaeggtwtssd
1vjs        65  fhqkgtvrtkyGTKGELQSAIKSLHSRDINVYGDVVINHkggadatedvt

1pamA      139  aengrlydng.nllggytndtqnlfhhygg....................
1smd       105  stcgsyfnpgsrdfpavpysgwdfndgkcktgsgdi..............
1jdc       108  ......ypd..kein.lp.agqgfwrndcadp..................
1bf2       131  pttatiy.............swrgldnatyye..................
1vjs       115  avevdpadrnrvisgehlikawthfhfpgrgstysdfkwhwyhfdgtdwd

1pamA      168  tdfstiengiykn....lydlaDLNHNNSSVDVYLKDaikmwl.dLGVDG
1smd       141  enyndatqvrdcr....lsgllDLALGKDYVRSKIAEymnhli.dIGVAG
1jdc       130  gnypndcddgdrf....iggdaDLNTGHPQVYGMFRDeftnlrsqYGAGG
1bf2       150  ltsgnqyfy.dnt.....gigaNFNTYNTVAQNLIVDslaywantMGVDG
1vjs       165  esrklnriykfqgkaydylmyaDIDYDHPDVAAEIKRwgtwyaneLQLDG

1pamA      213  IRVDAVkhmp...........................fgwqksfmatinn
1smd       186  FRIDASkhmw...........................pgdikaildklhn
1jdc       176  FRFDFVrgya...........................pervnswmtds..
1bf2       194  FRFDLAsvlgnsclngaytasapncpnggynfdaadsnvainrilreftv
1vjs       215  FRLDAVkhik...........................fsflrdwvnhvre

1pamA      236  yk........pvFTFGEWflgvnei.........speyhqfanes..gms
1smd       209  lnsnwfpegskpFIYQEVidlg...........gepikssdyfg...ngr
1jdc       197  ........adnsFCVGQLwkgpseypnwdwrntaswqqiikdwsdrakcp
1bf2       244  rpaag...gsglDLFAEPwaig..........gnsyqlggfpq....gws
1vjs       238  kt......gkemFTVAEYwqnd............lgalenylnktnfnhs

1pamA      267  lldfrfaqkarqvfrdnt...dnmyglkamlegsevdya....qvndqvT
1smd       245  vtefkygaklgtvirkwn..gekmsylknwgegwgfm......psdralV
1jdc       239  vfdfalkermqn.........gsiadwkhglngnpd.....prwrevavT
1bf2       277  ewnglfrdslrqaqnelgsmtiyvtqdandfsgssnlfqssgrspwnsiN
1vjs       270  vfdvplhyqfhaastqgg..gydmrklln..stvvsk......hplkavT

1pamA      310  FIDNHDMer.................................fht.....
1smd       287  FVDNHDNqr............................ghgaggasil...
1jdc       275  FVDNHDTgy............................spgqnggqhh...
1bf2       327  FIDVHDGmtlkdvyscngannsqawpygpsdggtstnyswdqgmsagtga
1vjs       310  FVDNHDTqp............................g.qslestvq...

1pamA      322  sngdrrkleqALAFTLTSr.GVPAIYYGseqymsgg........ndpdnr
1smd       306  tfwdarlykmAVGFMLAHpyGFTRVMSSyrwpryfengkdvndwvgppnd
1jdc       294  walqdglirqAYAYILTSp.GTPVVYWDhmydwg................
1bf2       377  avdqrraartGMAFEMLSa.GTPLMQGGdeylr.........tlqcnnna
1vjs       328  twf....kplAYAFILTResGYPQVFYGdmygtkgdsqreip........

1pamA      363  ar............lpsfsttttayqvIQKLAPLRKsn.....paiaygs
1smd       356  ngvtkevtinpdttcgndwvcehrwrqIRNMVNFRNvv........dgqp
1jdc       327  .......................ygdfIRQLIQVRRaa......gvrads
1bf2       417  yn..ldssan.wltyswttdqsnfytfAQRLIAFRKahpalrpsswysgs
1vjs       366  ......................alkhkIEPILKARKq........yayga

1pamA      396  therwin..............ndviiyerkf.....gnnVAVVAINrnmn
1smd       398  ftnwydng.............snqvafgr.......gnrGFIVFNNd..d
1jdc       348  aisfhsgy.............sglvatvsg......sqqTLVVALN....
1bf2       464  qltwyqpsgavadsnywnntsnyaiayaingpsl.gdsnSIYVAYN...g
1vjs       386  qhdyfdh..............hdivgwtregdssvansgLAALITDgp.g

1pamA      427  tpasitglvtsLPRGS.YNDVLGgiln.....gntLTVGAGGaa.....s
1smd       426  wtfsltl.qtgLPAGT.YCDVISgdkingnctgikIYVSDDG......ka
1jdc       375  ..sdlgn.pgqVASGS.FSEAVNasn.....gqvrVWRSGTGsgggepga
1bf2       510  wsssvtftlpaPPSGTQWYRVTDtcdwndgastfvAPGSETLig......
1vjs       421  gakrmyv.grqNAGET.WHDITGnrs.......epVVINSEG........

1pamA      466  nftlap...ggtavwqyttdattpiign
1smd       468  hfsisns..aedpfiaihaeskl.....
1jdc       416  lvsvsfr..cdngatqmgdsvy......
1bf2       554  gagttygq.cgqsllllisk........
1vjs       454  .wgefhvnggsvsiyvq...........

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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