1thm2 - reference 5


Name                 thermitase

Number of sequences              7
Alignment Length                 252
Longest Sequence                 229
Shortest Sequence                172
Average Percent Identity         38
Maximum Percent Identity         61
Minimum Percent Identity         26

Sequence Name    SWISSPROT Accession
1thm                 P04072         
1mpt                 Q99405         
1af4                 P00780         
hly_hal17            P29143         
sube_bacsu           P16396         
sepr_thesp           P80146         
prtt_serma           P29805         

Family   1thm 1mpt 1af4 hly_hal17 sube_bacsu sepr_thesp prtt_serma


1thm         1  qygpqkiq.....apqawdi.aegs.gaKIAIVDtgvqsnhpdlagk...
1mpt         1  pwgisrvq.....apaahnrgltgs.gvKVAVLDtgi.sthpdln.....
1af4         1  pygiplik.....adkvqaqgfkga.nvKVAVLDtgiqashpdln.....
hly_hal17    1  qyapqqvn.....ceaawdv.tygdpgvTISVVDqgiqydhedlegnmdg
sube_bacsu   1  qwnlepiq.....vkqawkagltgk.niKIAVIDsgi.sphddls.....
sepr_thesp   1  twgldridqrtlpldgrytytatga.gvHAYVVDtgillshqeftgr...
prtt_serma   1  qwgleais.....aefayaraytgk.gvTIGVIDdai.lshpefagkltr

1thm        41  ..vvgg.wdfvdndstp...qngnghgthcagiaaavtnnstgiagtapk
1mpt        39  ..irgg.asfvpgepst...qdgnghgthvagtiaal.nnsigvlgvaps
1af4        40  ..vvgg.asfvageayn...tdgnghgthvagtvaal.dnttgvlgvaps
hly_hal17   45  svsnyg.ddfvdndgdpypvsasenhgthvggiaaggtnnatghagis.n
sube_bacsu  39  ..iagg.ysavsytssy...kddnghgthvagiigak.hngygidgiape
sepr_thesp  47  ..igkg.ydaitpggsa...qdcnghgthvagtiggt......tygvakg
prtt_serma  44  ..ldngsynfsydkqdn...msfgthgthvagiaaakrd.gsgmhgvayd

1thm        85  asilavrvldnsgsgtwtavangityaadq..gakVISLSLGgtv.....
1mpt        82  aelyavkvlgasgsgsvssiaqglewagnn..gmhVANLSLGsps.....
1af4        83  vslyavkvlnssgsgsysgivsgiewattn..gmdVINMSLGgas.....
hly_hal17   93  csllsaralgdggggsltdiadaiqwsadq..gadVINMSLGggg.....
sube_bacsu  82  aqiyavkaldqngsgdlqsllqgidwsian..rmdIVNMSLGtts.....
sepr_thesp  85  vtlhpvrvldcngsgsnssviagldwvtqnhvkpaVINMSLGgga.....
prtt_serma  88  adiigtklndygnr.......ngreeliqs..aarVINNSWGirpdirrd

1thm       128  .............................................gnsgl
1mpt       125  .............................................psatl
1af4       126  .............................................gstam
hly_hal17  136  .............................................fsqtl
sube_bacsu 125  .............................................dskil
sepr_thesp 130  ..............................................stal
prtt_serma 129  akgdiiwlpngrpdyvawvktdvinevmrnksnlewgseqpvptgghsam

1thm       133  qqAVNYAWNKGSVVVAAAGNa.gntap........nypayysnaiavast
1mpt       130  eqAVNSATSRGVLVVAASGNs.gagsi........syparyanamavgat
1af4       131  kqAVDNAYARGVVVVAAAGNs.gnsgs....tntigypakydsviavgav
hly_hal17  141  snACEYAYNQGSLLVAAAGNgygnsv.........sypaaydtvmavssl
sube_bacsu 130  hdAVNKAYEQGVLLVAASGNd.gngkp.......vnypaayssvvavsat
sepr_thesp 134  dtAVMNAINAGVTVVVAAGNd.nrdac.......fysparvtaaitvgat
prtt_serma 179  .aTLLRAAKHGKLIVFSAGNynnynipeaqkslpyafpevlnnylivtnl

1thm       174  dq
1mpt       171  dq
1af4       176  ds
hly_hal17  182  de
sube_bacsu 172  ne
sepr_thesp 176  ts
prtt_serma 228  sn

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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