1aisB - reference 4


Name                 tata-binding protein

Number of sequences              5
Alignment Length                 582
Longest Sequence                 554
Shortest Sequence                193
Average Percent Identity         13
Maximum Percent Identity         32
Minimum Percent Identity         5

Sequence Name    SWISSPROT Accession
1aisB                P29095         
1volA                P28148         
1jkw                 P30274         
5EAT                 P51946         
DCS1_GOSAR           Q40577         

Family   1aisB 1volA 1jkw 5EAT DCS1_GOSAR


1aisB        1  ..................................................
1volA        1  ..................................................
1jkw         1  ..................................................
5EAT         1  ..................................................
DCS1_GOSAR   1  masqvsqmpsssplssnkdemrpkadfqpsiwgdlflncpdknidaetek

1aisB        1  ..................................................
1volA        1  ..................................................
1jkw         1  ..................................................
5EAT         1  ..................................................
DCS1_GOSAR  51  rhqq.lkeevrkmivapmanstqklafidsvqrlgvsyhftkeiedelen

1aisB        1  ..................................................
1volA        1  ..................................................
1jkw         1  ..................................................
5EAT         1  ..................................................
DCS1_GOSAR 100  iyhnnndaendlyttsirfrllrehgynvscdvfnkfkdeqgnfkssvts

1aisB        1  ..................................................
1volA        1  ..................................................
1jkw         1  .......................................myhnssqkrhw
5EAT         1  ..................................................
DCS1_GOSAR 150  dvrgllelyqasylrvhgedildeaisftthhlslavasldhplseevsh

1aisB        1  .............................................nlafa
1volA        1  .............................................ammna
1jkw        12  tfsseeqlarlradanrkfrckavangkvlpndpv.flepheemtlckyy
5EAT         1  .............................................mlhkq
DCS1_GOSAR 200  alkqsirrglprvearhyl.svyqdieshnkallefakidfnmlqflhrk

1aisB        6  .lseldritaqlk....LPRHVEEEAARLYreavrkgli.rgrsiesvma
1volA        6  .fkeittmadrin....LPRNKVDRTNNLFrqayeqksl.kgrandaias
1jkw        61  .ekrllefcsvfk..paMPRSVVGTACMYFkrfylnnsvmeyh.priiml
5EAT         6  elaqvsrwwkdldfvttLPYARDRVVECYFwalgvyfep.qysqarvmlv
DCS1_GOSAR 249  elseicrwwkdldfqrkLPYARDRVVEGYFwisgvyfep.qyslgrkmlt

1aisB       50  aCVYAACRllk.vprt..ldeiadia..................rvdkke
1volA       50  aCLYIACRqeg.vprt..fkeicavs..................riskke
1jkw       107  tCAFLACKvde.fnvs..spqfvgnlres...........plgqekaleq
5EAT        55  kTISMISIvddtfdaygtvkeleaytdaiqrwdineidrlpdymkisyka
DCS1_GOSAR 298  kVIAMASIvddtydsyatyeelipytnaierwdikcideipeymkpsyka

1aisB       79  igrsyrfiarnlnltpkklfvkptdyvnkfadelgl......sekvrrra
1volA       79  igrcfklilkaletsvdlit..tgdfmsrfcsnlcl......pkqvqmaa
1jkw       143  ileyellliqqlnfhlivhn..pyrpfegflidlktrypilenpeilrkt
5EAT       105  ildlykdyekelssagr.......shivchaiermk.....evvrnynve
DCS1_GOSAR 348  lldvyeemvqlvaehgr.qyrveyaknamirlaqsy...........lve

1aisB      123  ieildeayk.r..gltsgksPAGLVAAAlyiasllegekr....tqreva
1volA      121  thiarkave.l..dlvpgrsPISVAAAAiymasqasaekr....tqkeig
1jkw       191  addflnrialt..dayllytPSQIALTAilssasragi......tmesyl
5EAT       143  stwfiegy..t..ppvseylSNALATTTyyylattsylgmksa.teqdfe
DCS1_GOSAR 386  akwtlqnyk..psfeefkanALPTCGYAmlaitsfvgmgdivtpetfkwa

1aisB      166  evarv......tevtvrnrykelveklkikvpia................
1volA      164  diagv......advtirqsyrliyprapdlfpt.dfkfdtpvdklpq...
1jkw       233  seslmlkenrtclsqlldimksmrnlvkkyepprseevavlkqkldrchs
5EAT       188  wls........knpkileasviicrviddtatyeveksrgqiatgieccm
DCS1_GOSAR 434  a........sdpkiiqastiicrfmddvaehkfkhrreddcsaiecymee

1aisB      194  ..................................................
1volA      204  ..................................................
1jkw       283  aelal.............................................
5EAT       230  rdygistkeamakfqnmaetawkdinegllrptpvstefltpilnlariv
DCS1_GOSAR 476  ygvtaqeaydvfnkhvesawkdlnqeflkptemptevlnrslnlarvmdv

1aisB      194  ................................
1volA      204  ................................
1jkw       288  ................................
5EAT       280  evtyihnldgythpeevlkphiinllvdsiki
DCS1_GOSAR 526  lyregdgytyvgkaakggitslliepial...

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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