1havA - reference 1
Name hepatitis proteinase
Number of sequences 5
Alignment Length 245
Longest Sequence 199
Shortest Sequence 136
Average Percent Identity 15
Maximum Percent Identity 20
Minimum Percent Identity 11
Sequence Name SWISSPROT Accession
1havA P06441
1agjA P09331
5ptp P00760
2sga P00776
1svpA P27285
Family 1havA 1agjA 5ptp 2sga 1svpA
1havA 1 .knlvqfgvgeknGSVRWVmnalgvk.ddwLLVPSHAykfekdyemmefy
1agjA 1 .ntignvfvk...GQTSATgvlig...kntVLTNRHIakfa.ngdpskvs
5ptp 1 .pyqvslns....GYHFCGgslin...sqwVVSAAHCy.......ksgiq
2sga 1 iaggeaitt...gGSRCSLgfnvsvngvahALTAGHCtnis.......as
1svpA 1 .drlfdvkne..dGDVIGHalame....gkVMKPLHVk..........gt
1havA 49 fnrg.............gtyysisag.nvviqsldvgf...qDVVLMKVp
1agjA 43 frpsintddngntetpygeye.....vkeilqepfgag...vDLALIRLk
5ptp 36 vrlgedninvvegn.....eqfisa.sksivhpsynsntlnnDIMLIKLk
2sga 41 wsi......................gtrtgtsfp......nnDYGIIRHs
1svpA 34 idhp..................vlsklkftkssa.......yDMEFAQL.
1havA 82 t......ipkfrd....itqhfikkgdvpral.nrlatlvttvng.....
1agjA 85 pdqngvslgdkisp........akigtsndlkdgdkleligypfdhkv..
5ptp 80 s......aaslnsrvasis.....lptscasa.gtqclisgwgntkssgt
2sga 63 n......paaadgrvylyngsyqdittagnafvgqavqrsgst.......
1svpA 58 .......pvnmrseaf........tyts..ehpe...gfynwh.......
1havA 116 ..tpmlisegplkmeekatyvhkkndgttvdltvdqawrgk.....gegl
1agjA 125 ..nqmhrseiel...............ttlsr....glryy.....gftv
5ptp 118 sypdvlkclkapilsdsscksayp...gqit...snmfcagyleggkdsc
2sga 100 ...tglrsgsvtglnatvn........ygssgivygmiqtn.....vcaq
1svpA 81 .....hgavqysgg....................rftiprg.....vggr
1havA 159 pGMCGGALVSSnqsiqnAILGIHVAGgn......silvaklvt..
1agjA 149 pGNSGSGIFNS....ngELVGIHSSKvshldrehqinygvgigny
5ptp 162 qGDXGGPVVCS.....gKLQGIVSWGsg.caqknkpgvytkvcn.
2sga 134 pGDSGGSLFAG.....sTALGLTSGGsg.ncrtggttfyqpvte.
1svpA 101 .GDAGRPIMDN....sgRVVAIVLGGad...egtrtalsvvtwn.
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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