1wit - reference 3


Name                 twitchin		

Number of sequences              19
Alignment Length                 115
Longest Sequence                 100
Shortest Sequence                82
Average Percent Identity         22
Maximum Percent Identity         71
Minimum Percent Identity         10

Sequence Name    SWISSPROT Accession
1wit                 Q23550         
cpsf_chick           P16419         
cpss_human           Q00872         
pgbm_human           P98160         
vca1_mouse           P29533         
1tlk                 P56276         
dcc_human            P43146         
ptpf_human           P10586         
ptpd_human           P23468         
iml2_drome           Q09024         
nca2_xenla           P36335         
lar_drome            P16621         
caml_rat             Q05695         
2ncm                 P13596         
un52_caeel           Q06561         
1hnf                 P06729         
cd2_horse            P37998         
cd2_rat              P08921         
1vcaA                P19320         

Family   1wit cpsf_chick cpss_human pgbm_human vca1_mouse
Family   1tlk dcc_human ptpf_human ptpd_human iml2_drome nca2_xenla lar_drome caml_rat 2ncm un52_caeel
Family   1hnf cd2_horse cd2_rat
Family   1vcaA


1wit         1  lkpkiltasrKIKIKAGFTHNLEVDFIGapd..PTATWTVgds.gAALap
cpsf_chick   1  ldcsgkaaenTIVVVAGNKVRLDVPISGepa..PTVTWKRg...dQLFta
cpss_human   1  .....ldadnTVTVIAGNKLRLEIPISGepp..PKAMWSRg...dKAIme
pgbm_human   1  .....vlpegPVWVKVGKAVTLECVSAGepr..SSARWTRisstpAKLeq
vca1_mouse   1  .kettiwvspSPILEEGSPVNLTCSSDGipa..PKILWSRqln.nGELqp
1tlk         1  vkpyftktilDMDVVEGSAARFDCKVEGypd..PEVMWFKd...dNPVke
dcc_human    1  vppwflnhpsNLYAYESMDIEFECTVSGkpv..PTVNWMKn...gDVVip
ptpf_human   1  skpvfikvpeDQTGLSGGVASFVCQATGepk..PRITWMKk...gKKVss
ptpd_human   1  tpprftrtpvDQTGVSGGVASFICQATGdpr..PKIVWNKk...gKKVsn
iml2_drome   1  .kprivytekTHLDLMGSNIQLPCRVHArpr..AEITWLNne..nKEIvq
nca2_xenla   1  .........vNATANMDESVVLSCDADGfpd..PEISWLKk...gEPIed
lar_drome    1  ..peiirkpqNQGVRVGGVASFYCAARGdpp..PSIVWRKn...gKKVsg
caml_rat     1  ...fptnsssHLVALQGQSLILECIAEGfpt..PTIKWLHp...sDPMpt
2ncm         1  rvlqvdivpsQGEISVGESKFFLCQVAGdakd.KDISWFSp..ngEKLsp
un52_caeel   1  .iiqvllevsSESPQIGDRAWFDCKVTGdps..AVISWTKe..gnDDLpp
1hnf         1  ......tnalETWGALGQDINLDIPSFQmsddiDDIKWEKts.dkKKIaq
cd2_horse    1  .......kniTILGALERDINLDIPAFQmsehvEDIQWSKg...kTKIak
cd2_rat      1  ..........TVWGALGHGINLNIPNFQmtddiDEVRWERgs...TLVae
1vcaA        1  .fkiettpesRYLAQIGDSVSLTCSTTGc..esPFFSWRTqi..dSPLng

1wit        48  .............elLVdaks.sTTSIFFPSAK.RADSGNYKLKVKNELg
cpsf_chick  46  ..........tegrvHIdsqa.dLSSFVIESAE.RSDEGRYCITVTNPVg
cpss_human  41  ..........gsgriRTesyp.dSSTLVIDIAE.RDDSGVYHINLKNEAg
pgbm_human  44  ...........rtygLMds....HTVLQISSAK.PSDAGTYVCLAQNALg
vca1_mouse  47  ...............LSe.....NTTLTFMSTK.RDDSGIYVCEGINEAg
1tlk        46  ...........srhfQIdydeegNCSLTISEVC.GDDDAKYTCKAVNSLg
dcc_human   46  ..........sdyfqIVg.....GSNLRILGVV.KSDEGFYQCVAENEAg
ptpf_human  46  ...........qrfeVIefddgaGSVLRIQPLRVQRDEAIYECTATNSLg
ptpd_human  46  ...........qrfeVIefddgsGSVLRIQPLRTPRDEAIYECVASNNVg
iml2_drome  46  ..........ghrhrVLa.....NGDLLISEIK.WEDMGNYKCIARNVVg
nca2_xenla  37  ...........geekISfned..KSEMTIYRVE.KEDEAEYSCIANNQAg
lar_drome   44  .........tqsrytVLeqpgg.ISILRIEPVRAGRDDAPYECVAENGVg
caml_rat    43  .............drVIyqnh..NKTLQLLNVG.EEDDGEYTCLAENSLg
2ncm        48  .........nqqrisVVwnddd.SSTLTIYNAN.IDDAGIYKCVVTAEDg
un52_caeel  46  ............naqVT......GGRLLFTDLK.EDNAGVYRCVAKTKAg
1hnf        44  frkeketfkekdtykLFk.....NGTLKIKHLK.TDDQDIYKVSIYDTKg
cd2_horse   41  fkngsmtfqkdktyeVLk.....NGTLKIKHLE.RIHEGTYKVDAYDSDg
cd2_rat     38  fkrkmkpflksgafeILa.....NGDLKIKNLT.RDDSGTYNVTVYSTNg
1vcaA       46  ..............kVTne..gtTSTLTMNPVS.FGNEHSYLCTATCES.

1wit        83  ..edEAIFEVIvq..
cpsf_chick  84  ..edSATLHVRv...
cpss_human  79  ..eaHASIKVKv...
pgbm_human  78  ..taQKQVEVIv...
vca1_mouse  76  ..isRKSVELIi...
1tlk        84  ..eaTCTAELLvetm
dcc_human   80  ..naQTSAQLIvp..
ptpf_human  85  ..eiNTSAKLSv...
ptpd_human  85  ..eiSVSTRLTv...
iml2_drome  80  ...kDTADTFVyp..
nca2_xenla  73  ..eaEAIVLLKv...
lar_drome   84  ..daVSADATL....
caml_rat    77  ..saRHAYYVTve..
2ncm        87  .tqsEATVNVKifq.
un52_caeel  77  ..plQTRTVLNv...
1hnf        88  knvlEKIFDLKiq..
cd2_horse   85  knvlEETFHLSll..
cd2_rat     82  trilDKALDLRil..
1vcaA       78  .rklEKGIQVEiy..

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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