1thm - reference 1


Name                 serine protease				

Number of sequences              4
Alignment Length                 293
Longest Sequence                 279
Shortest Sequence                269
Average Percent Identity         49
Maximum Percent Identity         69
Minimum Percent Identity         36

Sequence Name    SWISSPROT Accession
1st3                 P29599         
1sbc                 P00780         
1sbt                 P00782         
2prk                 P06873         

Family   1st3 1sbc 1sbt
Family   2prk


1st3         1  .GQS.VPWGISRVq.....apaahnrgltGSGVKVAVLDTGI.STHPDL.
1sbc         1  .AQT.VPYGIPLIk.....adkvqaqgfkGANVKVAVLDTGIQASHPDL.
1sbt         1  .AQS.VPYGVSQIk.....apalhsqgytGSNVKVAVIDSGIDSSHPDL.
2prk         1  aAQTNAPWGLARIsstspgtstyyydesaGQGSCVYVIDTGIEASHPEFe

1st3        42  .nirggasfvpgepst.qDGNGHGTHVAGTIAALNNSIGVLGVAPSAELY
1sbc        43  .nvvggasfvageayn.tDGNGHGTHVAGTVAALDNTTGVLGVAPSVSLY
1sbt        43  .kvaggasmvpsetpnfqDDNSHGTHVAGTVAALNNSIGVLGVAPSSALY
2prk        51  graqmvktyyyss....rDGNGHGTHCAGTVGS.....RTYGVAKKTQLF

1st3        90  AVKVLGADGRGAISSIAQGLEWagnng.......mhVANLSLGSPSPSAT
1sbc        91  AVKVLNSSGSGSYSGIVSGIEWattng.......mdVINMSLGGASGSTA
1sbt        92  AVKVLGDAGSGQYSWIINGIEWaiann.......mdVINMSLGGPSGSAA
2prk        92  GVKVLDDNGSGQYSTIIAGMDFvasdknnrncpkgvVASLSLGGGY.SSS

1st3       133  LEQAVNSATSRGVLVVAASGNsga....ssisyPARYANAMAVGATDQNN
1sbc       134  MKQAVDNAYARGVVVVAAAGNsgnsgstntigyPAKYDSVIAVGAVDSNS
1sbt       135  LKAAVDKAVASGVVVVAAAGNegstgssstvgyPGKYPSVIAVGAVDSSN
2prk       141  VNSAAARLQSSGVMVAVAAGNnna...darnysPASEPSVCTVGASDRYD

1st3       179  NRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALV
1sbc       184  NRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALI
1sbt       185  QRASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALI
2prk       188  RRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYL

1st3       229  KQKNPSWSNVQIRNHLkntatslgstnl.ygs.glvnaeaatr
1sbc       234  LSKHPNLSASQVRNRLsstatylgssfy.ygk.glinveaaaq
1sbt       235  LSKHPNWTNTQVRSSLqntttklgdsfy.ygk.glinvqaaaq
2prk       238  MTLGKTTAASACR.YIadtankgdlsnipfgtvnllaynnyqa

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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