1rthA - reference 1
Name reverse transcriptase
Number of sequences 5
Alignment Length 556
Longest Sequence 541
Shortest Sequence 526
Average Percent Identity 42
Maximum Percent Identity 56
Minimum Percent Identity 37
Sequence Name SWISSPROT Accession
pol_sivai Q02836
pol_sivgb P22382
pol_fivpe P16088
pol_caevc P33459
pol_biv27 P19561
Family pol_sivai pol_sivgb pol_fivpe pol_caevc pol_biv27
pol_sivai 1 sqIEETKVQLKEGKDGPKLKQWPLSREKIEALTEICKQMEEEGKLSRIGG
pol_sivgb 1 ..IPITKVKLKPGVDGPRIKQWPLSKEKIVGLQKICDRLEEEGKISRVDP
pol_fivpe 1 ..IPVVKVKMKDPNKGPQIKQWPLTNEKIEALTEIVERLEKEGKVKRADS
pol_caevc 1 ..IPITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPP
pol_biv27 1 ekIEPLPVKVRGP..GPKVPQWPLTKEKYQALKEIVKDLLAEGKISEAAW
pol_sivai 51 ENPYNTPVFAIKKKDKTQWRMLVDFRELNKATQDFFEVQLGIPHPAGLQK
pol_sivgb 49 GNNYNTPIFAIKKKDKNEWRKLIDFRELNKLTQDFHELQLGIPHPAGIKK
pol_fivpe 49 NNPWNTPVFAIKKK.SGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQI
pol_caevc 49 HWTCNTPIFCIKKK.SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQK
pol_biv27 49 DNPYNTPVFVIKKKGTGRWRMLMDFRELNKITVKGQEFSTGLPYPPGIKE
pol_sivai 101 KKQITVIDIGDAYYSIPLCKEFRKYTAFTIPSVNNTGPGIRYQFNCLPQG
pol_sivgb 99 CKRITVLDIGDAYFSIPLDPDYRPYTAFTVPSVNNQAPGKRYMYNVLPQG
pol_fivpe 98 KKQVTVLDIGDAYFTIPLDPDYAPYTAFTLPRKNNAGPGRRFVWCSLPQG
pol_caevc 98 KKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQG
pol_biv27 99 CEHLTAIDIKDAYFTIPLHEDFRPFTAFSVVPVNREGPIERFQWNVLPQG
pol_sivai 151 WKGSPTIFQNTAANILEEIKRHTPGLEIVQYMDDLWLASdhdetrHNQQV
pol_sivgb 149 WKGSPCIFQGTVASLLEVFRKNHPTVQLYQYMDDLFVGSdytaeeHEKAI
pol_fivpe 148 WILSPLIYQSTLDNIIQPFIRQNPQLDIYQYMDDIYIGSnlskkeHKEKV
pol_caevc 148 WKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSdleikkHREIV
pol_biv27 149 WVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSnrd..dHKQIV
pol_sivai 201 DIVRKMLLEKGLETPDKKVQREppweWMGYKLHPNKWTINKIELppl.eg
pol_sivgb 199 VELRALLMTWNLETPEKKYQKEppfhWMGYELHPDKWKIEKVQLpel.ae
pol_fivpe 198 EELRKLLLWWGFETPEDKLQEEppytWMGYELHPLTWTIQQKQL.di.pe
pol_caevc 198 KDLANYIAQYGFTLPEEKRQKGypakWLGFELHPQTWKFQKHTLpeltkg
pol_biv27 197 QEIRDKLGSYGFKTPDEKVQEEr.vkWIGFELTPKKWRFQPRQL.ki.kn
pol_sivai 250 ewtVNKIQKVVGVLNWasQIYPGIKTKHTCAMLRGKKNLLEEIVWteeae
pol_sivgb 248 qptVNEIQKLVGKLNWaaQLYPGIKTKQLCKLIRGGLNITEKVTMteear
pol_fivpe 246 qptLNELQKLAGKINWasQAIPDLSIKALTNMMRGNQNLNSTRQWtkear
pol_caevc 248 titLNKLQKLVGELVWr.QSIIGKSIPNILKLMEGDRELQSERKI.eevh
pol_biv27 244 pltVNELQQLVGNCVWv.QPEVKIPLYPLTDLLRDKTNLQEKIQLtpea.
pol_sivai 300 a.eyknnqgivqetqegtYYDPLKe...LIATVqkqgegqwtyqftqe..
pol_sivgb 298 l.eyeqnkeilaeeqegsYYDPNKe...LYVRFqkttggdisfqwkqg..
pol_fivpe 296 l.evqkakkaieeqvqlgYYDPSKe...LYAKLslvgphqisyqvyqkdp
pol_caevc 296 vkeweacrkkl.eemegnYYNKDKd...VYGQLaw.gdkaieyivyqek.
pol_biv27 292 ikcveefnlklk...dpeWKDRIRegaeLVIKIqmvprg.ivfdllqd..
pol_sivai 344 gavlkvgryakqrethtndlrtLAHLVQKICKEALTIWGRLPRVQLPVDK
pol_sivgb 342 nkvlragkygkqktahsndlmkLAGATQKVGRESIVIWGFVPKMQIPTTR
pol_fivpe 342 ekilwygkmsrqkkkaentcdiALRACYKIREESIIRIGKEPRYEIPTSR
pol_caevc 340 gkplwvnvvh..niknlsipqqVIKAAQKLTQEVIIRTGKIPWILLPGKE
pol_biv27 336 gnpiwggvkgl.nydhsnkikkILRTMNELNRTVVIMTGREASFLLPGSS
pol_sivai 394 KTWDMWWq.dywQVSWIPewefvstpllvklw..yslvke.pikgedVYY
pol_sivgb 392 EIWEDWWh.eywQCTWIPevefistpmlerew..yslspe.plegveTYY
pol_fivpe 392 EAWESNLinspyLKAPPPeveyihaalnikra..lsmikdapipgaeTWY
pol_caevc 388 EDWRLELq..lgNITWMPk..fwscyrghtrwrkrniiee.vvegp.TYY
pol_biv27 385 EDWEAALqkeesLTQIFPv....kfyrhscrw..tsicgp.vrenltTYY
pol_sivai 440 VDGaaskvtklgkagYLSERG.ksrirelenTTNQQAELTAVKMALEDSG
pol_sivgb 438 VDGaanrdskmgkagYITDRG.fqrveeylnTTNQQTELHAVKLALEDSG
pol_fivpe 440 IDGg.rklgkaakaaYWTDTG.kwrvmdl.eGSNQKAEIQALLLALKAGS
pol_caevc 432 TDGg..kknkvgslgFIVSTGekfrkhe..eGTNQQLELRAIEEALKQGP
pol_biv27 428 TDGg..kkgk.taaaVYWCEG.rtkskvf.pGTNQQAELKAICMALLDGP
pol_sivai 489 ENVNIVTDSQYVMNILta.cpqe..snsPLVEQIIQALMKKRQVYLQWVP
pol_sivgb 487 SYVNIVTDSQYVVGILas.rpte..tdhPIVKEIIELMKGKEKIYLSWLP
pol_fivpe 487 EEMNIITDSQYVINIIl..qqpd..mmeGIWQEVLEELEKKTAIFIDWVP
pol_caevc 478 QTMNLVTDSRYAFEFLlrnwdeev.iknPIQARIMEIAHKKDRIGVHWVP
pol_biv27 473 PKMNIITDSRYAYEGMr..eepetwareGIWLEIAKILPFKQYVGVGWVP
pol_sivai 536 AHKGIg
pol_sivgb 534 AHKGIg
pol_fivpe 533 GHKGI.
pol_caevc 527 GHKGI.
pol_biv27 521 AHKGIg
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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