1gtr - reference 1


Name                 Glutaminyl-tRNA synthetase

Number of sequences              5
Alignment Length                 451
Longest Sequence                 436
Shortest Sequence                419
Average Percent Identity         42
Maximum Percent Identity         50
Minimum Percent Identity         35

Sequence Name    SWISSPROT Accession
syq_haein            P43831         
syq_human            P47897         
syq_luplu            P52780         
syq_yeast            P13188         
syep_human           P07814         

Family   syq_haein syq_human syq_luplu syq_yeast syep_human


syq_haein    1  hnfitqiidedla..sgkhksVHTRFPPEPNGYLHIGHAKSICLNFGLAK
syq_human    1  tphtmnllkqhle...itggqVRTRFPPEPNGILHIGHAKAINFNFGYAK
syq_luplu    1  ccntkallekhlk...atggkVLTRFPPEPNGYLHIGHAKAMFVDFGLAK
syq_yeast    1  pqaypelmkehle...vtggkVRTRFPPEPNGYLHIGHSKAIMVNFGYAK
syep_human   1  apekkqdvgkfvelpgaemgkVTVRFPPEASGYLHIGHAKAALLNQHYQV

syq_haein   49  EYQGLCNLRFDDTNPVKEDVEYVDSIKADVEWLGFKwegeprYASDYFDA
syq_human   48  ANNGICFLRFDDTNPEKEEAKFFTAICDMVAWLGYTpyk.vtYASDYFDQ
syq_luplu   48  DRNGGCYLRFDDTNPEAEKKEYIDHIEEIVQWMGWEpfk.itYTSNYFQE
syq_yeast   48  YHNGTCYLRFDDTNPEKEAPEYFESIKRMVSWLGFKpwk.itYSSDYFDE
syep_human  51  NFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKpdq.ftYTSDHFET

syq_haein   99  LYGYAVELIKKGLAYVDELSPDEMReyrgtltepgk.....nspYRDRTI
syq_human   97  LYAWAVELIRRGLAYVCHQRGEELKghntl...........pspWRDRPM
syq_luplu   97  LYEFAVELIRRGHAYVDHQTADEIKeyrekkl.........nspWRDRPI
syq_yeast   97  LYRLAEVLIKNGKAYVCHCTAEEIKrgrgikedgtpggeryackHRDQSI
syep_human 100  IMKYAEKLIQEGKAYVDDTPAEQMKaereqri.........eskHRKNPI

syq_haein  144  EENLALFEKMKNGEFAEGKASLRAKIDMASPfmvmrEPVIYRIKFSSHHQ
syq_human  136  EESLLLFEAMRKGKFSEGEATLRMKLVMEDGkm...DPVAYRVKYTPHHR
syq_luplu  138  SESLKLFEDMRRGLIEEGKATLRMKQDMQSDnynmyDLIAYRIKFTPHPH
syq_yeast  147  EQNLQEFRDMRDGKYKPGEAILRMKQDLNSPspqmwDLIAYRVLNAPHPR
syep_human 141  EKNLQMWEEMKKGSQFGHSCCLRAKIDMSSNngcmrDPTLYRCKIQPHPR

syq_haein  194  TGDKWCIYPMYDFTHCISDAIERITHSICTLEFQDNRRLYDWVLENISIE
syq_human  183  TGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVY
syq_luplu  188  AGDKWCIYPSYDYAHCIVDSIENVTHSLCTLEFETRRASYYWLLHALGIY
syq_yeast  197  TGTKWRIYPTYDFTHCLVDSMENITHSLCTTEFYLSRESYEWLCDQVHVF
syep_human 191  TGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIR

syq_haein  244  RPlphqyEFSRLNLEGTLTSKRKLLKLVNDEIVDGWNDPRMPTISGLRRR
syq_human  233  CPv..qwEYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRR
syq_luplu  238  QPy..vwEYSRLNVSNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRR
syq_yeast  247  RPa..qrEYGRLNITGTVLSKRKIAQLVDEKFVRGWDDPRLFTLEAIRRR
syep_human 241  KPy..iwEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRR

syq_haein  294  GYTPASLREFCRRIGVTkqdnv.vEYSALEACIREDLNENAPRAMAVidp
syq_human  281  GFPPEAINNFCARVGVTvaqtt.mEPHLLEACVRDVLNDTAPRAMAVles
syq_luplu  286  GMTPTAINAFVRGMGITrsdgtliSVERLEYHVREELNKTAPRAMVVrih
syq_yeast  295  GVPPGAILSFINTLGVTtsttn.iQVVRFESAVRKYLEDTTPRLMFVldp
syep_human 289  GMTVEGLKQFIAAQGSSrsvvn.mEWDKIWAFNKKVIDPVAPRYVALlkk

syq_haein  343  vrv..vienfese...avltaPNHPNRPELGERQLPFTKELYIDRADFre
syq_human  330  lrv..iitnfpaaksldi.qvPNFPADETKGFHQVPFAPIVFIERTDFke
syq_luplu  336  srlhsyleaksaie.vdakkwPDAQADDASALIKIPFSNVVYIERSDFrm
syq_yeast  344  vev..vvdnlsddy.eelatiPYRPGTPEFGERTVPFTNKFYIERSDFse
syep_human 338  evi..pv.nvpeaq.eemkevAKHPKNPEVGLKPVWYSPKVFIEGADAet

syq_haein  388  e.ankqykrLVLGKEVRLrna.yvik.aerVEKDANGEITTIfctydpet
syq_human  377  e.pepgfkrLAWGQPVGLrhtgyvie.lqhVVKGPSGCVESLevt.....
syq_luplu  385  q.dskdyygLAPGKSVILrya.fpikctevILADDNETILEIraeydp..
syq_yeast  391  nvddkeffrLTPNQPVGLikv.shtvsfksLEKDEAGKIIRIhvnyd...
syep_human 384  .........FSEGEMVTFinw.gnln.itkIHKNADGKIISLdakfnle.

syq_haein  435  l
syq_human  420  .
syq_luplu  431  .
syq_yeast  437  .
syep_human 422  .

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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