1adj - reference 1


Name                 histidyl-trna synthetase

Number of sequences              4
Alignment Length                 421
Longest Sequence                 418
Shortest Sequence                404
Average Percent Identity         35
Maximum Percent Identity         40
Minimum Percent Identity         29

Sequence Name    SWISSPROT Accession
syh_mycle            P46696         
syh_porpu            P51348         
syh_streq            P30053         
syh_mycge            P47281         

Family   syh_mycle syh_porpu syh_streq syh_mycge


syh_mycle    1  sfsgPKGIPDYFPPDSAQFVAVRDGLLTAArrrGYGDIELPVFEDTALFA
syh_porpu    1  ..qaIRGTKDILPDEQLYWQFIHEKVASLLkyaNYKEIKTPIFENSDLYD
syh_streq    1  ..qkPKGTQDILSVAAAKWQYVEGVARETFkqyHYGEIRTPMFEHYEVIS
syh_mycge    1  ..qkPRGVKDWFGDELVYFNWIVKKIRSLAfnwGFSEVKTPLFENAQLFQ

syh_mycle   51  RGVGESTDVVAKEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLdr..ga
syh_porpu   49  RGIGENTDIVNKEMYRFNDRSNRDITLRPEGTAGVVRAFIENRMdv..qn
syh_streq   49  RSVGDTTDIVTKEMYDFYDKGDRHITLRPEGTAPVVRSYVENKLfapevq
syh_mycge   49  R.SNANADIVQKELYQFFDKSQRELALRPEATTPIVRLACENKLmq.ean

syh_mycle   99  LPVKLCYAGPFFRYERPQAGRCRQLQQVGVEAIGVDDPALDAEVITIADA
syh_porpu   97  RLQKLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSSDARADAEIIHLAMN
syh_streq   99  KPVKLYYIGSMFRYERPQAGRLREFHQIGVECFGSANPATDVETIAMAYH
syh_mycge   97  FPLKLFCIGSMYRYERPQNNRFREHWQFSCEVFGFSNLFIFLDTLLFANS

syh_mycle  149  GFRSLGLDGFQLEITSLGDGTCRPQYRKLLQEFLl..qldLDEDTRRRAE
syh_porpu  147  IFNDLSVNDLQLDINSIGKAEDRNHYQAKLQEYLeqyyddLDTDSQNRLS
syh_streq  149  LFERLGIKGVTLHLNSLGNAASRAAYRQALIDYLspmrdtLSKDSQRRLD
syh_mycge  147  LLEALGITGYVLKINNLANFETLSKWNKALKDYLtpykleLTELSQKRLE

syh_mycle  197  LNPLRVLDDKRPQVQAMTAAAPVLLDHLSDGAKQHFDTVLAHLDALRVPY
syh_porpu  197  SNPIRILDTKNKYTQTILNDSPRISDFLSLESEKHFDDVCDYLTLLNVPY
syh_streq  199  ENPLRVLDSKEKEDKIAVANAPSILDYQDEESQAHFDAVRSMLEALAIPY
syh_mycge  197  KNPLRILDDKIDQKKSFVKNAPKITDFLDASAKQDSELLKTQLKKHNISF

syh_mycle  247  VINPRMVRGLDYYTKTTFEFvhpglgaQSGIGGGGRYDGLMRQLGGQDLS
syh_porpu  247  KINTQLVRGLDYYNDTAFEIkilksqgQDTLCGGGRYDSLIHQLGGNKTP
syh_streq  249  VIDTNMVRGLDYYNHTIFEFitevdqsELTICAGGRYDGLVEYFGGPATP
syh_mycge  247  EWTDNLVRGLDYYTGFVFEYvkn....QDTILAGGVYDNLVEELSSNPTP

syh_mycle  297  GIGFGLGVDRTLLALHAEgk.tVGETTRCDVFGVSLGEAAKLKVAMLAGQ
syh_porpu  297  AVGCAIGLER.LLLVAKDn..iLLPHMSIDCYIVSKGIKARKIGIIITQF
syh_streq  299  GFGFGLGLERLLLILDKQgv.eLPVEEGLDVYIAVLGADANVAALALTQA
syh_mycge  293  ALGFACGIERLINCLEIDkkafILNTKPKQMLVICLFEEALEELVWLAKL

syh_mycle  346  LRAAGVRVDLIYGDRGIRGAMRAAGRSGARIALIVDDCAIKADGVGVRDL
syh_porpu  344  LRNQLVKTELDISSSNFGKQLKQAHKKRAIACLILGDNEIQQETITIKWM
syh_streq  348  IRRQGFTVERDYLGRKIKAQFKSADTFKAKVVITLGESEIKAGQAVLKHN
syh_mycge  343  WREY.NQVTIYPKVIKVDNGIRLANRLGYTFIGIVGKTDFDKKAITIKNL

syh_mycle  396  ATGEQISVAVdsvvaevisri
syh_porpu  394  YTQEQENMSIiefknki....
syh_streq  398  QTRQEMTVSFdqiqtdfasif
syh_mycge  392  VSKQQTIYTWnel........

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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