1pamA - reference 2
Name cyclodextrin
Number of sequences 19
Alignment Length 607
Longest Sequence 511
Shortest Sequence 435
Average Percent Identity 35
Maximum Percent Identity 77
Minimum Percent Identity 16
Sequence Name SWISSPROT Accession
1pamA P05618
amy_thetu P26827
amy_bacci P08137
cdgt_bacli P14014
cdg2_bacma P31835
cdg1_bacma P04830
cdgt_bacst P31797
cdgt_bacs2 P31746
amym_bacst P19531
cdgt_klepn P08704
amyb_bacpo P21543
amy1_schpo Q09840
ydd2_schpo Q10427
2aaa P56271
amya_aspor P10529
amy1_schoc P19269
amy1_sacfi P21567
1jdc P13507
1smd P04745
Family 1pamA amy_thetu amy_bacci cdgt_bacli cdg2_bacma cdg1_bacma cdgt_bacst cdgt_bacs2 amym_bacst cdgt_klepn amyb_bacpo
Family amy1_schpo ydd2_schpo 2aaa amya_aspor amy1_schoc amy1_sacfi
Family 1jdc
Family 1smd
1pamA 1 .tDVIYQIFTDRfs..DGNPANnptgaa...fdgsc.tnlrlYCGGDWQG
amy_thetu 1 .tDVIYQIVTDRfv..DGNTSNnptgdl...ydpth.tslkkYFGGDWQG
amy_bacci 1 .tDVIYQIVTDRfv..DGNTANnpagsa...ydatcstnlklYCGGDWQG
cdgt_bacli 1 .tDVIYQVFTDRfl..DGNPSNnptgaa...fdgtc.snlklYCGGDWQG
cdg2_bacma 1 .tDTVYQIVTDRfv..DGNSANnptgaa...fssdh.snlklYFGGDWQG
cdg1_bacma 1 .tDVIYQIVTDRfa..DGDRTNnpagda...fsgdr.snlklYFGGDWQG
cdgt_bacst 1 .sDVVYQIVVDRfv..DGNTSNnpsgal...fssgc.tnlrkYCGGDWQG
cdgt_bacs2 1 .kDVIYQIVTDRfs..DGNPGNnpsgai...fsqnc.idlhkYCGGDWQG
amym_bacst 1 .gDVIYQIIIDRfy..DGDTTNnnpaksyglydptk.skwkmYWGGDLEG
cdgt_klepn 1 .kETIYFLFLDRfs..DGDPSNn.agfnsatydpn...nlkkYTGGDLRG
amyb_bacpo 1 .kQSIYFIMTDRfs..NGDPSNd....nyggfnsn.nsdqrkWHGGDFQG
amy1_schpo 1 .rRSIYQIITDRfsleegat...........eripcdpvrfmYCGGTWNG
ydd2_schpo 1 .kQVIYQVLTDRfaldedn............fyaka.sgn.lYLGGTWKG
2aaa 1 .tQSIYFLLTDRfgrtdns............ttatcntgneiYCGGSWQG
amya_aspor 1 .sQSIYFLLTDRfartdgs............ttatcntadqkYCGGTWQG
amy1_schoc 1 .dQSIYQIVTDRfarsdgs............ttadclvsdrkYCGGSYKG
amy1_sacfi 1 .sQSIYQIVTDRfartdgd............tsascntedrlYCGGSFQG
1jdc 1 gdEIILQGFHWNvvreapn...........................dwyn
1smd 1 grTSIVHLFEWR...................................wvd
1pamA 44 IINKIndgyLTGMGITAIWISQPVENIysvinysgv.nntAYHGYWARDF
amy_thetu 44 IINKIndgyLTGMGVTAIWISQPVENIyavlpdstfggstSYHGYWARDF
amy_bacci 45 IMNKIndgyFTGMGITALWISQPVENIysvinysgv.nntAYHGYWARDF
cdgt_bacli 44 LVNKIndnyFSDLGVTALWISQPVENIfatinysgv.tntAYHGYWARDF
cdg2_bacma 44 ITNKIndgyLTGMGITALWISQPVENItavinysgv.nntAYHGYWPRDF
cdg1_bacma 44 IIDKIndgyLTGMGVTALWISQPVENItsvikysgv.nntSYHGYWARDF
cdgt_bacst 44 IINKIndgyLTDMGVTAIWISQPVENVfsvmndasg..saSYHGYWARDF
cdgt_bacs2 44 IIDKIndgyLTDLGITALWISQPVENVyalhpsg....ytSYHGYWARDY
amym_bacst 47 VRQKL..pyLKQLGVTTIWLSPVLNNLdtlagtd....ntGYHGYWTRDF
cdgt_klepn 44 LINKL..pyLKSLGVTSIWITPPIDNVnntdaag....ntGYHGYWGRDY
amyb_bacpo 43 IINKLd..yIKNMGFTAIWITPVTMQKse..........yAYHGYHTYDF
amy1_schpo 39 IRNHLd..yIQGMGFDAIWISPIFENVegndid.....gsSYHGYWTTNL
ydd2_schpo 36 ITRNLd..yIKSLGCTAIWISPIVKNIsettdc.....gqAYHGYWAQDM
2aaa 38 IIDHLd..yIEGMGFTAIWISPITEQLpqdtad.....geAYHGYWQQKI
amya_aspor 38 IIDKLd..yIQGMGFTAIWITPVTAQLpqttay.....gdAYHGYWQQDI
amy1_schoc 38 IIDKLd..yIQGMGFTAIWISPVVEQIpdntay.....gyAYHGYWMKNI
amy1_sacfi 38 IIKKLd..yIKDMGFTAIWISPVVENIpdntay.....gyAYHGYWMKNI
1jdc 24 ilrqqaa.tIAADGFSAIWMPVPWRDFsswsd...gsksgGGEGYFWHDF
1smd 16 ialecer.yLAPKGFGGVQVSPPNENVaihnp.....frpwwery.qpvs
1pamA 93 KKTNPAYGTMQDFKNLIDTAhah..nIKVIIDFAPNHtspassddpsfae
amy_thetu 94 KRTNPYFGSFTDFQNLINTAhah..nIKVIIDFAPNHtspasetdptyae
amy_bacci 94 KKTNPAFGSMTDFANLISAAhsr..nIKVVIDFAPNHtspametnasfge
cdgt_bacli 93 KKTNPYFGTMTDFQNLVTTAhak..gIKIIIDFAPNHtspametdtsfae
cdg2_bacma 93 KKTNAAFGSFTDFSNLIAAAhsh..nIKVVMDFAPNHtnpasstdpsfae
cdg1_bacma 93 KQTNDAFGDFADFQNLIDTAhah..nIKVVIDFAPNHtspadrdnpgfae
cdgt_bacst 92 KKPNPFFGTLSDFQRLVDAAhak..gIKVIIDFAPNHtspasetnpsyme
cdgt_bacs2 90 KKTNPYYGNFDDFDRLMSTAhsn..gIKVIMDFTPNHsspaletnpnyve
amym_bacst 91 KQIEEHFGNWTTFDTLVNDAhqn..gIKVIVDFVPNHstpfkandstfae
cdgt_klepn 88 FRIDEHFGNLDDFKELTSLMhspdynMKLVLDYAPNHsnanden.....e
amyb_bacpo 81 YAVDGHLGTMDKLQELVRKAhdk..nIAVMVDVVVNHt............
amy1_schpo 82 YELNHHFGTKEEFMELIQELhkr..dIWILLDVAINSm............
ydd2_schpo 79 TQLNENFGTEEDLKELVNAIhek..nMLCMVDIVVNHm............
2aaa 81 YDVNSNFGTADNLKSLSDALhar..gMYLMVDVVPDHm............
amya_aspor 81 YSLNENYGTADDLKALSSALher..gMYLMVDVVANHm............
amy1_schoc 81 DELNTNFGTADELKQLASELhsr..sMLLMVDVVYNHy............
amy1_sacfi 81 YKINENFGTADDLKSLAQELhdr..dMLLMVDIVTNHy............
1jdc 70 NK.NGRYGSDAQLRQAASALgga..gVKVLYDVVPNHmnr..........
1smd 59 yklctrsgnedefrnmvtrcnnv..gVRIYVDAVINHmcgnavsagtsst
1pamA 141 ngrlydngnllggytnd....tqNLFHHYgg......tdfst....ieng
amy_thetu 142 ngrlydngtllggytnd....tnGYFHHYgg......tdfss....yedg
amy_bacci 142 ngklydngtllggytgd....tnGYFHHNgg......tdfst....lkng
cdgt_bacli 141 ngklydngnlvggytnd....tnGYFHHNgg......sdfst....leng
cdg2_bacma 141 ngalynngtllgkysnd....taGLFHHNgg......tdfst....tesg
cdg1_bacma 141 nggmydngsllgaysnd....taGLFHHNgg......tdfst....iedg
cdgt_bacst 140 ngrlydngtllggytnd....anMYFHHNgg......ttfss....ledg
cdgt_bacs2 138 ngaiydngallgnysnd....qqNLFHHNgg......tdfss....yeds
amym_bacst 139 ggalynngtymgnyfdd...atkGYFHHNgdi.....snwdd....ryea
cdgt_klepn 133 fgalyrdgvfitdyptn.vaantGWYHHNggv.....tnwnd....ffqv
amyb_bacpo 117 .gdf.qpgn...gfaka.pfdkaDWYHHNgditd...gdyns....nnqw
amy1_schpo 118 .ain.gpleqm.sfekvipfndaSFFHPHcwv......dyesndiesvqn
ydd2_schpo 115 .gha.gskp.v.nfllyqpfnsgKYYHNWqfv.....qnydd..phetit
2aaa 117 .gya.gngndv.dysvfdpfdssSYFHPYcli.....tdwdn..ltmved
amya_aspor 117 .gyd.gagssv.dysvfkpfssqDYFHPFcfi.....qnyed..qtqved
amy1_schoc 117 .awn.gdgssv.dyssftpfnqqSYFHDYcli.....tnynd..qtnved
amy1_sacfi 117 .gsd.gsgdsi.dyseytpfndqKYFHNYcli.....snydd..qaqvqs
1jdc 107 .gypdkeinl........pa.gqGFWRNDcadp....gnypn.......d
1smd 107 cgsyfnpgsr..dfpav.pysgwDFNDGKcktgsgdienynd..atqvrd
1pamA 177 iykn.....lYDLADLNHNNSSVDVYLKDaikmwl.dlGVDGIRVDAVKH
amy_thetu 178 iyrn.....lFDLADLNQQNSTIDSYLKSaikvwl.dmGIDGIRLDAVKH
amy_bacci 178 iykn.....lYDLADLNHNNSTIDTYFKNairlwl.dmGIDGIRVDAVKH
cdgt_bacli 177 iykn.....lYDLADLNHNNSTIDTYFKDaiklwl.dmGVDGIRVDAVKH
cdg2_bacma 177 iykn.....lYDLADINQNNNTIDSYLKEsiqlwl.nlGVDGIRFDAVKH
cdg1_bacma 177 iykn.....lYDLADINHNNNAMDAYFKSaidlwl.gmGVDGIRFDAVKH
cdgt_bacst 176 iyrn.....lFDLADLNHQNPVIDRYLKDavkmwi.dmGIDGIRMDAVKH
cdgt_bacs2 174 iyrn.....lYDLADYDLNNTVMDQYLKEsikfwl.dkGIDGIRVDAVKH
amym_bacst 177 qwknftdpagFSLADLSQENGTIAQYLTDaav....qlVAHGLRIDAVKH
cdgt_klepn 173 knhn.....lFNLSDLNQSNTDVYQYLLDgskfwi.daGVDAIRIDAIKH
amyb_bacpo 154 kiengd...vAGLDDLNHENPATANELKNwikwllnetGIDGLRLDTVKH
amy1_schpo 159 cwlgde...nLLLADVDTENEVVLSVLEKwiknvvqeyDIDGIRFDAIKH
ydd2_schpo 154 gwlgds...hVNLPDIRTEKNEVRKFFQNwvsdlikryQFDGIRLDTAKH
2aaa 157 cwegdt...iVSLPDLDTTETAVRTIWYDwvadlvsnySVDGLRIDSVLE
amya_aspor 157 cwlgdn...tVSLPDLDTTKDVVKNEWYDwvgslvsnySIDGLRIDTVKH
amy1_schoc 157 cwegdt...eVSLPDLSTEDNEVIGVFQTwvsdfvqnySIDGLRIDSAKH
amy1_sacfi 157 cwegds...sVALPDLRTEDSDVASVFNSwvkdfvgnySIDGLRIDSAKH
1jdc 136 cddgdrf..iGGDADLNTGHPQVYGMFRDeftnlrsqyGAGGFRFDFVRG
1smd 152 cr.......lSGLLDLALGKDYVRSKIAEymnhli.diGVAGFRIDASKH
1pamA 221 MPfgwqksfmatinnyk........pvFTFGEWFlgvnei..........
amy_thetu 222 MPfgwqknfmdsilsyr........pvFTFGEWFlgtnei..........
amy_bacci 222 MPfgwqknwmssiysyk........pvFTFGEWFlgtnet..........
cdgt_bacli 221 MPqgwqknwmssiyahk........pvFTFGEWFlgsaap..........
cdg2_bacma 221 MPqgwqksyvssiyssan.......pvFTFGEWFlgpdem..........
cdg1_bacma 221 MPfgwqksfvssiyggdh.......pvFTFGEWYlgadqt..........
cdgt_bacst 220 MPfgwqkslmdeidnyr........pvFTFGEWFlsenev..........
cdgt_bacs2 218 MSegwqtslmseiyshk........pvFTFGEWFlgsgev..........
amym_bacst 223 FNsgfsksladklyqkk........diFLVGEWYgddpgtan........
cdgt_klepn 217 MDksfiqkwtsdiydysksigre..gfFFFGEWFgasantttgv......
amyb_bacpo 201 VPkgflkdfdqaa............ntFTMGEIFhg..............
amy1_schpo 206 APiefwlrmskaa............diFTIGEYFtg..............
ydd2_schpo 201 VEksffptfieaa............nvFTTGEVFhg..............
2aaa 204 VQpdffpgynkas............gvYCVGEIDng..............
amya_aspor 204 VQkdfwpgynkaa............gvYCIGEVLdg..............
amy1_schoc 204 VDtasltkfedas............gvYNLGEVYqg..............
amy1_sacfi 204 VDqgffpdfvsas............gvYSVGEVFqg..............
1jdc 184 YApervnswmtdsad..........nsFCVGQLWkgpseypnwdwrntas
1smd 194 MWpgdikaildklhnlnsnwfpegskpFIYQEVIdlgg............
1pamA 253 speyhq.fanesgmslldfrfaqkarqvfrdnt.dnmyglka.mlegsev
amy_thetu 254 dvnnty.fanesgmslldfrfsqkvrqvfrdnt.dtmyglds.miqstas
amy_bacci 254 dannty.fanesgmslldfrfsqkvrqvfrdgs.dtmyglds.mlsstaa
cdgt_bacli 253 dadntd.fanesgmslldfrfnsavrnvfrdnt.snmyalds.mltataa
cdg2_bacma 254 tqdnin.fanqsgmhlldfafaqeirevfrdks.etmtdlns.visstgs
cdg1_bacma 254 dgdnik.fanesgmnlldfeyaqevrevfrdkt.etmkdlye.vlastes
cdgt_bacst 252 dannhy.fanesgmslldfrfgqklrqvlrnns.dnwygfnq.miqdtas
cdgt_bacs2 250 dpqnhh.fanesgmslldfqfgqtirnvlkdrt.snwydfne.mitstek
amym_bacst 257 hlekvr.yannsgvnvldfdlntvirnvfgtft.qtmydlnn.mvnqtgn
cdgt_klepn 259 dg.naidyantsgsalldfgfrdtlervlvgrsgntmktlns.ylikrqt
amyb_bacpo 225 dpayvgdytr.yldaaldfpmyytikdvfghd..qsmrkikd.rysddr.
amy1_schpo 230 spaeacdyqnsgldsflnfplywpitwafnntg.lqcealai.ainqine
ydd2_schpo 225 dpkvvgdyqk.ylpstlnfplffqlretfldpk.hsmfsfydkavldvrh
2aaa 228 npasdcpyqk.vldgvlnypiywqllyafesss.gsisnlyn.miksvas
amya_aspor 228 dpaytcpyqn.vmdgvlnypiyypllnafksts.gsmddlyn.mintvks
amy1_schoc 228 dptytcpyqn.ymkgvtnyplyypvyrffsdts.atsselts.mistlqs
amy1_sacfi 228 dpaytcpyqn.yipgvsnyplyypttrffkttd.sssseltq.missvas
1jdc 224 wqqiikdwsdrakcpvfdfalkermqn.......gsiadwkhglngnpdp
1smd 232 epikssdyf..gngrvtefkygaklgtvirkwngekmsylkn.wgegwgf
1pamA 300 dyaqvndqvTFIDNHDMERfht.....................sngdrrk
amy_thetu 301 dynfindmvTFIDNHDMDRfy......................nggstrp
amy_bacci 301 dyysvndqvTFLDNHDMDRfqv.....................sgangrk
cdgt_bacli 300 dynqvndqvTFIDNHDMDRfkt.....................savnnrr
cdg2_bacma 301 synyinnmvTFIDNHDMDRfqq.....................agastrp
cdg1_bacma 301 qydyinnmvTFIDNHDMDRfqv.....................agsgtra
cdgt_bacst 299 aydevldqvTFIDNHDMDRfmi.....................dggdprk
cdgt_bacs2 297 eynevidqvTFIDNHDMSRfsv.....................gsssnrq
amym_bacst 304 eykykenliTFIDNHDMSRfls.....................vnsknka
cdgt_klepn 307 vftsddwqvVFMDNHDMARigtalrsnattfgpgnnetggsqseafaqkr
amyb_bacpo 270 yyrdaqtngVFIDNHDVKRflndasgkpga.............nydkwpq
amy1_schpo 278 ecndinvlgTFIGNHDLPRish.....................nntdqar
ydd2_schpo 273 yfkdvtvlcNFLENHDFPRffh.....................etkdial
2aaa 275 dcsdptllgNFIENHDNPRfak.....................ytsdysq
amya_aspor 275 dcpdstllgTFVENHDNPRfas.....................ytndial
amy1_schoc 275 scsdvsllgNFIENHDQVRfps.....................vtsdtsl
amy1_sacfi 275 scsdptlltNFVENHDNERfas.....................mtsdqsl
1jdc 267 rwrev..avTFVDNHDTGYspgqnggqhh..............walqdgl
1smd 279 mpsdr..alVFVDNHDNQRghgaggasil..............tfwdarl
1pamA 329 LEQALAFTLTSR.gvPAIYYgseqymsg.........gNDPDNRarl...
amy_thetu 329 VEQALAFTLTSR.gvPAIYYgteqymtg.........nGDPYNRamm...
amy_bacci 330 LEQALALTLTSR.gvPAIYYgteqymtg.........nGDPNNRakm...
cdgt_bacli 329 LEQALAFTLTSR.gvPAIYYgteqyltg.........nGDPDNRgkm...
cdg2_bacma 330 TEQALAVTLTSR.gvPAIYYgteqymtg.........nGDPNNRgmm...
cdg1_bacma 330 TEQALALTLTSR.gvPAIYYgteqymtg.........dGDPNNRamm...
cdgt_bacst 328 VDMALAVLLTSR.gvPNIYYgteqymtg.........nGDPNNRkmm...
cdgt_bacs2 326 TDMALAVLLTSR.gvPTIYYgteqyvtg.........gNDPENRkpl...
amym_bacst 333 NLHQRLLSFSLRgvrPPIYYgteqymag.........gNDPYNRgmm...
cdgt_klepn 357 IDLGLVATMTVR.giPAIYYgtehyaanftsnsfgqvgSDPYNRekm...
amyb_bacpo 307 LKAALGFTLTSR.giPIIYQgteqgysg.........gDDPANRenm...
amy1_schpo 307 IMNAITFVMMWD.giPIIYYgteqnfns.........yHDPFNReal...
ydd2_schpo 302 ALNALTALIFMD.giPIIYYgqeqmfdg.........gSDPDNRegl...
2aaa 304 AKNVLSYIFLSD.giPIVYAgeeqhyag.........gKVPYNReat...
amya_aspor 304 AKNVAAFIILND.giPIIYAgqeqhyag.........gNDPANReat...
amy1_schoc 304 IKNDMAFIILGD.giPIIYYgqeqglng.........gSDPANReal...
amy1_sacfi 304 ISNAIAFVLLGD.giPVIYYgqeqglsg.........kSDPNNReal...
1jdc 301 IRQAYAYILTSP.gtPVVYWdhmydwg.......................
1smd 313 YKMAVGFMLAHPygftrvmssyrwpryfengkdvndwvgppndngvtkev
1pamA 366 .........psfsttttayQVIQKLAPLRKsn....paiaygstherwin
amy_thetu 366 .........tsfntsttayNVIKKLAPLRKsn....paiaygttqqrwin
amy_bacci 367 .........ssfststtayNVISKLAPLRKsn....paiaygttqqrwin
cdgt_bacli 366 .........psfsksttafNVISKLAPLRKsn....paiaygstqqrwin
cdg2_bacma 367 .........tgfdtnktayKVIKALAPLRKsn....palaygsttqrwvn
cdg1_bacma 367 .........tsfntgttayKVIQALAPLRKsn....paiaygttterwvn
cdgt_bacst 365 .........ssfnkntrayQVIQKLSSLRRnn....palaygdteqrwin
cdgt_bacs2 363 .........ktfdrstnsyQIISKLASLRQtn....salgygttterwln
amym_bacst 371 .........pafdttttafKEVSTLAGLRRnn....aaiqygtttqrwin
cdgt_klepn 403 .........pgfdteseafSIIKTLGDLRKss....paiqngtytelwvn
amyb_bacpo 344 ..........nfnanhdlyQYIAKLNYVRNnh....palqngsqrekwvd
amy1_schpo 344 .......wlsnfdmenvyyKLIGILNRFRKsvqrqeenyvntrstilsvk
ydd2_schpo 339 .......wkskyntsnpmfRHLSSMIRTRQnlvetypeftyvlsfqlyid
2aaa 341 .......wlsgydtsaelyTWIATTNAIRKlaiaadsayityandafytd
amya_aspor 341 .......wlsgyptdselyKLIASANAIRNyaiskdtgfvtyknwpiykd
amy1_schoc 341 .......wlsgyntdseyyELISKLNQIRNqaikkdsaystykssvvsss
amy1_sacfi 341 .......wlsgynkesdyyKLIAKANAARNaavyqdssyatsqlsvifsn
1jdc 327 .................ygDFIRQLIQVRRaa......gvradsaisfhs
1smd 363 tinpdttcgndwvceh.rwRQIRNMVNFRNvv........dgqpftnwyd
1pamA 403 ..ndVIIYERkf.gnnVAVVAINrnm.ntpasitglvts..lprgs.ynd
amy_thetu 403 ..ndVYIYERkf.gnnVALVAINrnl.stsynitglyta..lpagt.ytd
amy_bacci 404 ..ndVYIYERkf.gnnVAVVAINknl.tssysiaglnts..lpsgt.ytd
cdgt_bacli 403 ..ndVYIYERkf.gksVAVVAVNrnl.ttptsitnlnts..lpsgt.ytd
cdg2_bacma 404 ..sdVYVYERkf.gsnVALVAVNrss.ttaypisgalta..lpngt.ytd
cdg1_bacma 404 ..ndVLIIERkf.gssAALVAINrns.saaypisgllss..lpagt.ysd
cdgt_bacst 402 ..gdVYVYERqf.gkdVVLVAVNrss.ssnysitglfta..lpagt.ytd
cdgt_bacs2 400 ..edIYIYERtf.gnsIVLTAVNss..nsnqtitnlnts..lpqgn.ytd
amym_bacst 408 ..ndVYIYERkf.fndVVLVAINrnt.qssysisglqta..lpngs.yad
cdgt_klepn 440 ..ddILVFERrs.gndIVIVALNrg...eantinvknia..vpngv.yps
amyb_bacpo 380 ..dsFYSFQRsk.ngdEAIVFINnswnsqtrti.gnfdn..lsngtrltn
amy1_schpo 387 ..ihHIVVQKl....nVITVLNNyg.ihneerlsivf....kplgaspkd
ydd2_schpo 382 ..dsVYVFTRp....gVIIAISNegs.tssfkveidlkehwkevpssftd
2aaa 384 ..snTIAMAKgtsgsqVITVLSNkgssgssytltlsgsg..ytsgtklie
amya_aspor 384 ..dtTIAMRKgtdgsqIVTILSNkgasgdsytlslsgag..ytagqqlte
amy1_schoc 384 ..dhYIATRKgsdanqLISIFNNlgsngsq.ditvsntg..yssgdkvid
amy1_sacfi 384 ..dhVIATKRgs....VVSVFNNlgssgss.dvtisntg..yssgedlve
1jdc 354 gysgLVATVSgs..qqTLVVALN.......sdlgn.pgq..vasgs.fse
1smd 404 ngsnQVAFGRgn...rGFIVFNNddw...tfsltl.qtg..lpagt.ycd
1pamA 446 vlggil.....ngntltvgaggaa.....snftlap.ggtavwqyttdat
amy_thetu 446 vlggll.....ngnsisvasdgsv.....tpftlsa.gevavwqyvsssn
amy_bacci 447 vlansl.....sgnsitvgssgav.....ntftlqa.ggeavwsytkaat
cdgt_bacli 446 vlggvl.....ngnnits.sggni.....ssftlaa.gatavwqytaset
cdg2_bacma 447 vlggll.....ngnsitv.nggtv.....snftlaa.ggtavwqytttes
cdg1_bacma 447 vlngll.....ngnsitvgsggav.....tnftlaa.ggtavwqytapet
cdgt_bacst 445 qlggll.....dgntiqvgsngsv.....nafdlgp.gevgvwaysates
cdgt_bacs2 442 elqqrl.....dgntitvnangav.....nsfqlra.nsvavwqvsnpst
amym_bacst 451 ylsgll.....ggngisv.sngsv.....asftlap.gavsvwqystsas
cdgt_klepn 481 li.........gnnsvsv.ankrt......tltlmq.neavvirsqsd..
amyb_bacpo 424 ql.........sndsvqi.nngsi......tvtlap.kevkvf.......
amy1_schpo 426 tffdii.....nnqkyvvntdg........tlkvvitngfpivlyptski
ydd2_schpo 425 il.........tqktipc.kdhk........lkiksksglpkiliss...
2aaa 430 ay.........tctsvtvdssgd........ipvpmasglprvllpasvv
amya_aspor 430 vi.........gcttvtvgsdgn........vpvpmagglprvlyptekl
amy1_schoc 429 ii.........scnsvlagdsgs........lsvsisggmpqvyapssvl
amy1_sacfi 425 vl.........tcstvs..gssd........lqvsiqggqpqifvpaky.
1jdc 391 avnasn.....gqvrvwrsgtgsgggepgalvsvsfrcdngatqmgdsvy
1smd 444 visgdkingnctgikiyvsddg......kahfsisnsaedpfiaihaesk
1pamA 485 tpiign.
amy_thetu 485 spligh.
amy_bacci 486 apvigh.
cdgt_bacli 484 tptigh.
cdg2_bacma 485 spiign.
cdg1_bacma 486 spaign.
cdgt_bacst 484 tpiigh.
cdgt_bacs2 481 spligq.
amym_bacst 489 apqigs.
cdgt_klepn 512 .......
amyb_bacpo 450 .......
amy1_schpo 463 ets....
ydd2_schpo 454 dpsfl..
2aaa 463 dssslcg
amya_aspor 463 agskic.
amy1_schoc 462 sgsgic.
amy1_sacfi 455 .asdic.
1jdc 436 .......
1smd 488 l......
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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