arp - reference 1


Name                 actin

Number of sequences              5
Alignment Length                 450
Longest Sequence                 418
Shortest Sequence                380
Average Percent Identity         29
Maximum Percent Identity         40
Minimum Percent Identity         22

Sequence Name    SWISSPROT Accession
arp1_n_cra           P38673         
arp2_d_mel           P45888         
arp3_b_tau           P32391         
arpx_d_mel           P45890         
arpx_c_ele           Q17351         

Family   arp1_n_cra arp2_d_mel arp3_b_tau arpx_d_mel arpx_c_ele


arp1_n_cra   1  mtdslhnaPIVLDNGSGTIRAGFAGDDVPkcHFPSf.vgrpkhlrvla..
arp2_d_mel   1  mdrskgrnVIVCDNGTGFVKCGYAGSNFPthIFPSm.vgrpmiravnkig
arp3_b_tau   1  ..magrlpACVVDCGTGYTKLGYAGNTEPqfIIPSciaikesakvgdqaq
arpx_d_mel   1  ....manaVVVLDNGAHTAKVGLANQDEP.hVVPNc.imkakser.....
arpx_c_ele   1  ....msltTIIFDNGGHNMKIGTIDSESP.rLVPNs.ivkakhek.....

arp1_n_cra  48  .....galegeVFIG..qkaaselrgllkiryPLEHGIVTDWDDMEKIWA
arp2_d_mel  50  .....dievkdLMVG...deasqlrsllevsyPMENGVVRNWDDMCHVWE
arp3_b_tau  49  rrvmkgvddldFFIG...deaie.kptyatkwPIRHGIVEDWDLMERFME
arpx_d_mel  40  .........rrAFVGnqidecrdtsalyyil.AFQRGYLLNWHTQKTVWD
arpx_c_ele  40  .........krVFVAheqeecsdkfslfyvr.PIERGYVVNWDTQQQIWE

arp1_n_cra  91  YVYd.egLKTLSEEHPVLLTEPPLNPRANRDTAAQILFETFNVPALYTSI
arp2_d_mel  92  YTFgpkkMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAI
arp3_b_tau  95  QVIf.kyLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAV
arpx_d_mel  80  YIFskdgIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTT
arpx_c_ele  80  KTFg..sMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTS

arp1_n_cra 140  QAVLSLYas..........grttgVVLDSGDGVSHAVPVYQGFTVPNSIR
arp2_d_mel 142  QAAWTLYaq..........glisgVVIDSGDGVTHICPVYEEFALPHLTR
arp3_b_tau 144  QAVLALAaswtsrqvg..ertltgTVIDSGDGVTHVIPVAEGYVIGSCIK
arpx_d_mel 130  AADLAAFnyvadseerttmeslncIIIDVGYSFTHVVPFVLGRRVLQGIR
arpx_c_ele 128  ASTLVAKhsnkinn......ekcaVVVDSGFSWTTVASFVNGMLIQDSVI

arp1_n_cra 180  RIDVAGRDVTEYLQTLLRKSGYVFHTSAekevVRLIKESVTYVAHDprke
arp2_d_mel 182  RLDIAGRDITRYLIKLLLLRGYAFNHSAdfetVRIMKEKLCYIGYDieme
arp3_b_tau 192  HIPIAGRDITYFIQQLLRDREVGIPPEQsletAKAVKERYSYVCPDlvke
arpx_d_mel 180  RIDMGGKALTNQLKELISYRHLNVMDES..hvVNQIKEDVCFVAEDfkqa
arpx_c_ele 172  RIDVGGKALTNKLKDWVSYRQLNVSEET..yvINECKEDLCFVSQNfdes

arp1_n_cra 230  ekewaaakm....dpakiaeYVLPDGnklkiga.................
arp2_d_mel 232  qrlalett.......vlvesYTLPDGrvikvgg.................
arp3_b_tau 242  fnkydtdgskwikqytginaISKKEFs.idvgy.................
arpx_d_mel 228  mqvhyseekrr....evtvdYVLPDFttvkrgyvrvpgkpredeeqqqmv
arpx_c_ele 220  mkearnrfqgn....ttmkrYIMPDFhstfrgvvkdvkeph..dpqipsi

arp1_n_cra 259  ....ERFRAPEILFDPEIIGLEy.pgVHQIVVDSINRTDLDLRRDLYSNI
arp2_d_mel 258  ....ERFEAPEALFQPHLINVEg.pgIAELAFNTIQAADIDIRPELYKHI
arp3_b_tau 274  ....ERFLGPEIFFHPEFANPDftqpISEVVDEVIQNCPIDVRRPLYKNI
arpx_d_mel 274  slcnERFTVPELLFNPSDIGVQq.vgIPEAVADCLKACPWEAHRELLLNI
arpx_c_ele 264  hlgvERFAIPEILFNPSDIDIDq.cgVAEAVIESICQCPEALRPALAENI

arp1_n_cra 304  VLSGGSTLTKGFGDRLLTEVqklav................kdMRIKIFA
arp2_d_mel 303  VLSGGSTMYPGLPSRLEREIkqlylervlkndtek.....lakFKIRIED
arp3_b_tau 320  VLSGGSTMFRDFGRRLQRDLkrtvdarlklseelsggrlkpkpIDVQVIT
arpx_d_mel 323  LIVGGSAQFPGFLPRLKRDLralvp................ddLEVSLIC
arpx_c_ele 313  IVIGGSSCFPGFRERLEREVrsmlpae..............ygLNVSNDV

arp1_n_cra 338  PPERKYSTWIGGSILAGLstfrk.mwvsiddwhenpd.iihtkft.....
arp2_d_mel 348  PPRRKDMVFIGGAVLAEVtkdrdgfwmskqeyqeqglkvlqklqkish..
arp3_b_tau 370  HHMQRYAVWFGGSMLASTpefyq.vchtkkdyeeigpsicrhnpvfgvms
arpx_d_mel 357  PEDPVRYAWYGGKEVATSpnfee.fvytqddyeeygfqginqr.......
arpx_c_ele 349  IN.PQTHSWHCGQELLTAskv...pwinrkdwdergdslefsnffqtlvq

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

Back to Index