1ar1 - reference 4


Name                 cytochrome c oxidase

Number of sequences              9
Alignment Length                 412
Longest Sequence                 372
Shortest Sequence                164
Average Percent Identity         30
Maximum Percent Identity         44
Minimum Percent Identity         6

Sequence Name    SWISSPROT Accession
hv54_mouse           P18525         
kv5i_mouse           P01642         
hv1g_human           P23083         
hv1c_human           P01744         
cox1_albtu           Q09333         
hv1f_human           P06326         
cox2_cyaca           P48870         
cox1_halha           P33518         
2BRD                 P02945         

Family   hv54_mouse kv5i_mouse hv1g_human hv1c_human cox1_albtu hv1f_human cox2_cyaca cox1_halha


hv54_mouse   1  ..................................................
kv5i_mouse   1  ..................................................
hv1g_human   1  ..................................................
hv1c_human   1  ..................................................
cox1_albtu   1  ..................................................
hv1f_human   1  ..................................................
cox2_cyaca   1  igfqdpatpimegivnlhhdiiffliiiiifvswilfrtlflfnsktnpv
cox1_halha   1  ..................................................
2BRD         1  ..................................................

hv54_mouse   1  ..................................................
kv5i_mouse   1  ..................................................
hv1g_human   1  ..................................................
hv1c_human   1  ..................................................
cox1_albtu   1  ..................................................
hv1f_human   1  ..................................................
cox2_cyaca  51  aynfshgtfiellwtltpslvligiavpsfallysideiidpaitikavg
cox1_halha   1  ..................................................
2BRD         1  ..................................................

hv54_mouse   1  ..................................................
kv5i_mouse   1  ..................................................
hv1g_human   1  ..................................................
hv1c_human   1  ..................................................
cox1_albtu   1  ..................................................
hv1f_human   1  ..................................................
cox2_cyaca 101  rqwywsyeysdyvneeneflafhsyilpeedlelgqfrllevdnriiipv
cox1_halha   1  ..................................................
2BRD         1  ..................................................

hv54_mouse   1  ..............................................gfft
kv5i_mouse   1  ................................................mm
hv1g_human   1  ..................................................
hv1c_human   1  ...............................................wyd
cox1_albtu   1  ..................................................
hv1f_human   1  ..................................................
cox2_cyaca 151  nthiriivtgadvihswavpslgvkcdaipgrlnqisffikregiyywwt
cox1_halha   1  ...............................................lwk
2BRD         1  ........xaqitgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkf

hv54_mouse   5  rwfmSTNHKDIGVLYLFTAGLAGLISVTLTVYMRMELQHPGVqymclegm
kv5i_mouse   3  kwfmSTNHKNIGILYIILALWSGMLGSSMSLIIRMELSSPGSwis.....
hv1g_human   1  .wltTVDHKKIAIMYLIAGTLFFVKAGVMALFMRIQLMYPEMnfl.....
hv1c_human   4  yftfNVDHKVIGIQYLVTAFIFYLIGGLMAVAMRTELATADSdfl.....
cox1_albtu   1  ..ltTVDHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNqfl.....
hv1f_human   1  ...lSVSHKMIGMCYLLVAILCGFLGYIYSLFIRLELSIIGCgvl.....
cox2_cyaca 201  ryvfSQDAKVIAIQYSLTASAIGLVALVLSWLMRLQLGFPGTfsf.....
cox1_halha   4  ewltSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAgea.....
2BRD        43  yaittlvpaiaftmylsmllgygltmvpfggeqnpiywaryadwl.fttp

hv54_mouse  55  rlvadaaaectpnahlwnvvvtyhgilmmffvvipalfggfgnyfmplhi
kv5i_mouse  48  ............ndqiyntivtshaflmiffmvmpfliggfgnwliplml
hv1g_human  45  ............sgqtfnefitmhgtimlflaatpllf.afmnyviplqi
hv1c_human  49  ............dpnlynafltnhgtimiflwvvpaaiggfgnylvplmi
cox1_albtu  44  ............tgeqynqiltlhgatmlfffiiqagltgfgnfvvplml
hv1f_human  43  ..........fgdyqyynvlvtthglvmvfafimpvmmgglvnyfvpvls
cox2_cyaca 246  ...........idanqylqfitmhgmimviylltalflggfgnyliplmv
cox1_halha  49  .........gflpphhydqiftahgvimiffvampfvi.glmnlvvplqi
2BRD        92  lllldlallvdadqgtilalvgadgimigtglvgaltkvysyrfvwwais

hv54_mouse 105  gapdmafprlnnlsywlyvcgvslaiasllspggsdqpgagvgwvlyppl
kv5i_mouse  86  gspdmafprmnnisfwllppslfmlllsnlfyps.....pgtgwtvyppl
hv1g_human  82  gardvafpfvnalgfwifffgglllslswffggg.....pdagwtayvpl
hv1c_human  87  gardmafprlnalafwlnppagalllasflfgga......qagwtsyppl
cox1_albtu  82  gardvalprvnafsywaflgaivlalmsyffpgg....apsvgwtfyypf
hv1f_human  83  gfpdmvfprlnnmsfwmfmggfgalvsgllteeg.....mgigwtmyptl
cox2_cyaca 285  gardmvfpyvnmlsywvyllavlvlasaffvpgg....ptgagwtlyppq
cox1_halha  89  gardvafpflnnlsfwftvvgvilvnvslgvgef.....aqtgwlayppl
2BRD       142  taamlyilyvlffgftskaesmrpevastfkvlrnv...tvvlwsaypvv

hv54_mouse 155  stte....agyamdlaifavhvsgatsilgainiittflnmr........
kv5i_mouse 131  sayl..yhsspsvdfaifslhmsgissimgslnlmvtimmmk........
hv1g_human 127  ssrd...ygglgidfyvlglqvsgigtlisainflvtivnmr........
hv1c_human 131  stit....attaqsmwilaiilvgtssilgsvnfivtiwkmk........
cox1_albtu 128  saq.....sesgvdfylaailllgfssllgnanfvatiynlr........
hv1f_human 128  icvd..fhsslacdftvfavhllgvssilnsinllgtlfccr........
cox2_cyaca 331  ailsgtpgqdwgivlmlsslilfiigftmgglnyvvtvlqar........
cox1_halha 134  sgie..yspgvgvdywiwslqlsgigttltginffvtilkmr........
2BRD       189  wlig...segagivplnietllfmvldvsakvgfglillrsraifgeaea

hv54_mouse 193  ............
kv5i_mouse 171  ............
hv1g_human 166  ............
hv1c_human 169  ............
cox1_albtu 165  ............
hv1f_human 168  ............
cox2_cyaca 373  ............
cox1_halha 174  ............
2BRD       236  pepsadgaaats

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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