1fmb - reference 1
Name hiv-1 protease
Number of sequences 4
Alignment Length 106
Longest Sequence 104
Shortest Sequence 98
Average Percent Identity 49
Maximum Percent Identity 86
Minimum Percent Identity 35
Sequence Name SWISSPROT Accession
1fmb P32542
7upjB P03366
pol_sivcz P17283
POL_SIVMK P05897
Family 1fmb 7upjB pol_sivcz POL_SIVMK
1fmb 1 vTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLTTahynrlkyrgrk.YQ
7upjB 1 pQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAG.....iel.gnn.YS
pol_sivcz 1 pQITLWQRPLIPVKVEGQLCEALLDTGADDTVIER.....iqlqgl..WK
POL_SIVMK 1 pQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTG.....iel.gph.YT
1fmb 50 GTGIGGVGGNVETFS.TPVTIKKKGRHIKTRMLVADIPVTILGRDILQDL
7upjB 44 PKIVGGIGGFINTLEYKNVEIEVLNKKVRATIMTGDTPINIFGRNILTAL
pol_sivcz 44 PKMIGGIGGFIKVKQFDNVHIEIEGRKVVGTVLVGPTPVNIIGRNILTQL
POL_SIVMK 44 PKIVGGIGGFINTKEYKNVEIEVLGKRIKRTIMTGDTPINIFGRNLLTAL
1fmb 99 GAKLVl
7upjB 94 GMSLNl
pol_sivcz 94 GCTLV.
POL_SIVMK 94 GMSLNl
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
Back to Index