BAliBASE Index

  1. Reference 1
  2. Reference 2
  3. Reference 3
  4. Extensions
  5. Insertions
  6. Back to the BAliBASE home page


    Reference 1


    short, <25% identity

    1aboA		SH3
    1idy		myb dna-binding domain
    1r69		repressor
    1tvxA		pertussis toxin
    1ubi		ubiquitin
    1wit		twitchin
    2trx		thioredoxin
    

    short, 20%=40% identity

    1aab		high mobility group protein
    1fjlA		homeodomain
    1hfh		factor h
    1hpi		high-potential iron-sulfur protein
    1csy		SH2
    1pfc		immunoglobulin PFc fragment
    1tgxA		cardiotoxin
    1ycc		cytochrome e
    3cyr		cytochrome c3
    451c		cytochrome c
    

    short, >35% identity

    1aho		toxin II
    1csp		cold shock protein
    1dox		ferredoxin [2fe-2s]
    1fkj		immunophilin
    1fmb		hiv-1 protease
    1krn		serine protease
    1plc		plastocyanin
    2fxb		ferredoxin
    2mhr		hemerythrin
    9rnt		ribonuclease
    

    medium, <25% identity

    1bbt3		foot-and-mouth disease virus
    1sbp		sulfate binding protein
    1havA		hepatitis proteinase
    1uky		uridylate kinase
    2hsdA		3 Alpha, 20 beta-hydroxysteroid dehydrogenase
    2pia		phtalate reductase
    3grs		glutathione reductase
    kinase		protein kinase
    

    medium, 20-40% identity

    1ad2		ribosomal protein l1
    1aym3		rhinovirus 16 coat protein
    1gdoA		glucosamine 6-phosphate synthase
    1ldg		lactate dehydrogenase
    1mrj		alpha tricosanthin
    1pgtA		glutathione
    1pii		anthranilate isomerase
    1ton		tonin
    2cba		anhydrase
    

    medium, >35% identity

    1amk		triose phosphate isomerase
    1ar5A		superoxide dismutase
    1ezm		elastase
    1led		lectin
    1ppn		papain
    1pysA		phenylalanyl-trna synthetase
    1thm		serine protease
    1tis		thymidylate sythase
    1zin		adenylate kinase
    5ptp		serine protease
    

    long, <25% identity

    1ajsA		aminotransferase
    1cpt		cytochrome p450
    1lvl		dihydrolipoamide dehydrogenase
    1pamA		cyclodextrin
    1ped		alcohol dehydrogenase
    2myr		myrosinase
    4enl		enolase
    gal4		gal4
    

    long, 20%<40% identity

    1ac5		carboxypeptidase
    1adj		histidyl-trna synthetase
    1bgl		b-galactoxidase
    1dlc		endotoxin
    1eft		eftu
    1fieA		coagulation factor xiii
    1gowA		beta_glycosidase
    1pkm		pyruvate kinase
    1sesA		seryl-tRNA synthetase
    2ack		acetylcholinesterase
    arp		actin
    glg		glutamyl-trna synthetase
    

    long, >35% identity

    1ad3		aldehyde dehydrogenase
    1gpb		glycogen phosphorylase b 
    1gtr		glutaminyl-tRNA synthetase
    1lcf		lactoferrin
    1rthA		reverse transcriptase
    1taq		taq DNA polymerase
    3pmg		phosphoglucomutase
    actin		actin
    
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    Reference 2


    short

    1aboA		SH3
    1csy		SH2
    1idy		myb dna-binding domain
    1r69		repressor
    1tgxA		cardiotoxin
    1tvxA		pertussis toxin
    1ubi		ubiquitin
    1wit		twitchin
    2trx		thioredoxin
    

    medium

    1sbp		sulfate binding protein
    1havA		hepatitis proteinase
    1uky		uridylate kinase
    2hsdA		3 Alpha, 20 beta-hydroxysteroid dehydrogenase
    2pia		phtalate reductase
    3grs		glutathione reductase
    kinase		protein kinase
    

    long

    1ajsA		aminotransferase
    1cpt		cytochrome p450
    1lvl		dihydrolipoamide dehydrogenase
    1pamA		cyclodextrin
    1ped		alcohol dehydrogenase
    2myr		myrosinase
    4enl		enolase
    
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    Reference 3


    short

    1idy		myb dna-binding domain
    1r69		repressor
    1ubi		ubiquitin
    1wit		twitchin
    

    medium

    1uky		uridylate kinase
    2pia		phtalate reductase
    kinase		protein kinase
    

    long

    1ajsA		aminotransferase
    1pamA		cyclodextrin
    1ped		alcohol dehydrogenase
    2myr		myrosinase
    4enl		enolase
    
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    Reference 4 - Extensions


    1aisB		tata-binding protein
    1ar1		cytochrome c oxidase
    1au7A		pit-1
    1ckaA		SH3
    1csp		major cold shock protein
    1dynA		pleckstrin homology domain
    1lkl		SH2
    1mfa		immunoglobulin fab fragment
    1pfc		immunoglobulin PFc fragment
    1pysA		glycyl-tRNA synthetase
    1vln		concanavalin a
    1ycc		cytochrome e
    2abk		endonuclease iii
    kinase1		protein kinase
    kinase2		protein kinase
    
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    Reference 4 - Insertions


    1eft		eftu
    1ivy		human protective protein
    1pysA		glycyl-tRNA synthetase
    1qpg		3-Phosphoglycerate kinase
    1thm1		thermitase
    1thm2		thermitase
    2cba		carbonic anhydrase ii
    S51		nuclear receptor
    S52		nuclear receptor
    kinase1		protein kinase
    kinase2		protein kinase
    kinase3		protein kinase
    
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