1sbp - reference 2


Name                 glutamine bind					

Number of sequences              19
Alignment Length                 333
Longest Sequence                 267
Shortest Sequence                216
Average Percent Identity         23
Maximum Percent Identity         70
Minimum Percent Identity         8

Sequence Name    SWISSPROT Accession
1gggA                P10344         
yqix_bacsu           P54535         
fliy_ecoli           P39174         
yckk_bacsu           P42199         
yxem_bacsu           P54952         
hisp_neigo           Q06758         
path_vibha           P52626         
arti_ecoli           P30859         
arti_haein           P45091         
lapt_pasha           P49618         
artj_ecoli           P30860         
1lst                 P02911         
hisj_ecoli           P39182         
occt_agrt6           P35121         
noct_agrt5           P35120         
1sbp                 P02906         
1wod                 P37329         
1mrp                 P35755         
1pot                 P23861         

Family   1gggA yqix_bacsu fliy_ecoli yckk_bacsu yxem_bacsu hisp_neigo path_vibha arti_ecoli arti_haein lapt_pasha artj_ecoli 1lst hisj_ecoli occt_agrt6 noct_agrt5
Family   1sbp
Family   1wod
Family   1mrp
Family   1pot


1gggA        1  .....lvVATDTAFVPFefkq..gdlyvgfdvdLWAAIAKELKldyelkp
yqix_bacsu   1  .....liMGTSADYKPFeyke..gdnivgfdveLAKALAKKAGyeievqd
fliy_ecoli   1  .....llVGLEGTYPPFsfqg.ddgkltgfeveFAQQLAKHLGveaslkp
yckk_bacsu   1  .....ltVGTEGTYEPFtyhdkdtdkltgydveVITEVANSLGlkvdfke
yxem_bacsu   1  .....lhVGATGQSYPFayke..ngkltgfdveVMEAVAKKIDmkldwkl
hisp_neigo   1  .......VASNAEFAPFesld.skgnvegfdvdLMNAMAKAGNfkiefkh
path_vibha   1  .....vkVGMSGRYFPFtfvk..qdklqgfevdMWDEIGKRNDykieyvt
arti_ecoli   1  .....irFATEASYPPFesid.annqivgfdvdLAQALCKEIDatctfsn
arti_haein   1  .....ltFAMQPSYPPFettn.akgeiigfdvdVTNAICQEIQatckfks
lapt_pasha   1  ......iIVMEPSYPPFemte.ekgeiigfdvdIANAICKEMNanctfhs
artj_ecoli   1  .....inFGVSATYPPFesig.anneivgfdidLAKALCKQMQaectftn
1lst         1  alpqtvrIGTDTTYAPFsskd.akgefigfdidLGNEMCKRMQvkctwva
hisj_ecoli   1  aipqnirIGTDPTYAPFeskn.sqgelvgfdidLAKELCKRINtqctfve
occt_agrt6   1  aqeksitIATEGGYAPWnfsg.pggkldgfeidLANALCEKMKakcqiva
noct_agrt5   1  ...ksitIATEGSYAPYnfkd.aggkligfdidLGNDLCKRMNieckfve
1sbp         1  ...kdiqLLNV.SYDP......trelyeqynkaFSAHWKQETGdnvvidq
1wod         1  ...gkitvfaa.............asltnamqdIATQFKKEKGvdvvssf
1mrp         1  ....ditvyng..............qhkeaataVAKAFEQETGikvtlns
1pot         1  ...ntlyfynw.............teyvppg..LLEQFTKETGikviyst

1gggA       44  m..dfsgiipalq....tknVDLALag..ititderkkaidf........
yqix_bacsu  44  m..dfnslitalk....skqVDLVLsg..mtptperkkqvdf........
fliy_ecoli  45  t..kwdgmlasld....skrIDVVInq..vtisderkkkydf........
yckk_bacsu  46  t..qwdsmfagln....skrFDVVAnq..vgktd.renqydf........
yxem_bacsu  44  l..efsglmgelq....tgkLDTISnq..vavtderketynf........
hisp_neigo  43  q..pwdslfpaln....ngdADIVMsg..vtitddrkqsmdf........
path_vibha  44  a..nfsglfglle....tgrIDTISnq..itmtdarkakylf........
arti_ecoli  45  q..afdslipslk....frrVEAVMgg..mditperekqvlf........
arti_haein  45  e..tfdalipnlk....akrFDAAIsa..iditdarakqvlf........
lapt_pasha  44  q..pfdsliqslk....qkqFDAAIsg..mgiteprkkqvlf........
artj_ecoli  45  h..afdslipslk....frkYDAVIsg..mditperskqvsf........
1lst        50  s..dfdalipslk....akkIDAIIss..lsitdkrqqeiaf........
hisj_ecoli  50  n..pldalipslk....akkIDAIMss..lsitekrqqeiaf........
occt_agrt6  50  q..nwdgimpslt....gkkYDAIMaa..msvtpkrqevigf........
noct_agrt5  47  q..awvgiipslt....agrYDAIMaa..mgiqparekviaf........
1sbp        41  shggsgkqatsvin...gieADTVTlalaydvnaiaergrid........
1wod        35  a..ssstlarqiea...gapADLFIsadqkwmdyavdkkaid........
1mrp        33  g..kseqlagqlkeegdktpADVFYteqtatfadlseaglla.....pis
1pot        33  y.esnetmyaklkt.ykdgaYDLVVps.tyyvdkmrkegmiqkidksklt

1gggA       78  ....................sdGYYKSGLLVMVKAnnnd...........
yqix_bacsu  78  ....................sdVYYTANHMIVSKKdsg............
fliy_ecoli  79  ....................stPYTISGIQALVKKgnegt..........
yckk_bacsu  79  ....................sdKYTTSRAVVVTKKdnnd...........
yxem_bacsu  78  ....................tkPYAYAGTQIVVKKdntd...........
hisp_neigo  77  ....................sdPYFEITQVVLVPKgkk............
path_vibha  78  ....................adPYVVDGAQITVRKgnds...........
arti_ecoli  79  ....................ttPYYDNSALFVGQQgk.............
arti_haein  79  ....................sdAYYDSSASYVALKgk.............
lapt_pasha  78  ....................sePYFPSSAAFIAKKdt.............
artj_ecoli  79  ....................ttPYYENSAVVIAKKdt.............
1lst        84  ....................sdKLYAADSRLIAAKgspi...........
hisj_ecoli  84  ....................tdKLYAADSRLVVAKnsdi...........
occt_agrt6  84  ....................siPYAAGINGFAVMGdsklaempglgetys
noct_agrt5  81  ....................srPYLLTPMTFLTTAdspllktqvaienlp
1sbp        80  ..........knwikrlpddsaPYTSTIVFLVRKGnpk............
1wod        72  ..................tatrQTLLGNSLVVVAPkasv...........
1mrp        76  eqti..qqtaqkgvplapkkdwIALSGRSRVVVYDhtklsekd.......
1pot        80  nfsnldpdmlnkpfdpnndysiPYIWGATAIGVNGdavdpks........

1gggA       97  ............vksvkdld...gkvv.avk......sGTGSVDYAkan.
yqix_bacsu  96  ............iqslkdlk...gktv.gvq......lGSIQEEKGkel.
fliy_ecoli  99  ............iktaddlk...gkkv.gvg......lGTNYEEWLrqn.
yckk_bacsu  98  ............ikseadvk...gkts.aqs......lTSNYNKLAtna.
yxem_bacsu  97  ............iksvddlk...gktv.aav......lGSNHAKNLesk.
hisp_neigo  95  ............vsssddlkk..mnkv.gvv......tGHTGDFSVskl.
path_vibha  97  ............iqgvedla...gktv.avn......lGSNFEQLLrdy.
arti_ecoli  96  ............ytsvdqlk...gkkvrsvq......nGTTHQKFImdk.
arti_haein  96  .............atlesa.....kni.gvq......nGTTFQQYTvae.
lapt_pasha  95  ................dfak...vkti.gvq......nGTTYQHYLake.
artj_ecoli  96  ............yktfadlk...gkci.gme......nGTTHQKYIqdq.
1lst       103  ............qptleslk...gkhv.gvl......qGSTQEAYAndn.
hisj_ecoli 103  ............qptveslk...gkrv.gvl......qGTTQETFGneh.
occt_agrt6 114  ldsqadaakkaiadissfln...gttv.gv.......qGSTTASTFldk.
noct_agrt5 111  ldniapeqkaeldkftkife...gvkf.gvq......aGTSHEAFMkqm.
1sbp       108  ..........qihdwndlik...pgvs.vit.pnpkssGGARWNYLaawg
1wod        93  ...qkdftidsktnwtslln...ggrl.avgdpehvpaGIYAKEALqklg
1mrp       117  ..........meksvldyatpkwkgki.gyvs....tsGAFLEQVValsk
1pot       122  ...........vtswadlwkpeykgsl.lltd....daREVFQMALrklg

1gggA      124  ....................iktkdlrqf..pniDNAYMElgtnrADAVL
yqix_bacsu 123  ....................speygfktedrnriSDLVQEiksdrFDAAI
fliy_ecoli 126  ....................vqgvdvrty..dddPTKYQDlrvgrIDAIL
yckk_bacsu 125  ......................gakvegv..egmAQALQMiqqgrVDMTY
yxem_bacsu 124  ..................dpdkkinikty..etqEGTLKDvaygrVDAYV
hisp_neigo 123  ..................lgndnpkiarf..envPLIIKElenggLDSVV
path_vibha 124  ....................dkdgkinik..tydTGIEHDvalgrADAFI
arti_ecoli 124  ....................hpeittvpy..dsyQNAKLDlengrIDGVF
arti_haein 120  ....................tkqyspksy..aslQNAILDlksgrIDIIF
lapt_pasha 118  ....................kkeynvksy..asyQNAILDvqngrIDAIF
artj_ecoli 123  ....................hpevktvsy..dsyQNAFIDlkngrIDGVF
1lst       130  ..................wrtkgvdvvay..anqDLIYSDltagrLDAAL
hisj_ecoli 130  ..................wapkgieivsy..qgqDNIYSDltagrIDAAF
occt_agrt6 152  ..................yfkgsvdikey..ksvEEHNLDltsgrLDAVL
noct_agrt5 150  ....................mpsvqisty..dtiDNVVMDlkagrIDASL
1sbp       143  yalhhnnndqakaedfvkalfknvevldsgargsTNTFVE..rgiGDVLI
1wod       136  a..............wdtlspk.lapaed..vrgALALVE....rNEAPL
1mrp       152  mk......gdkvalnwlkglkengklyak..nsvALQAVE....nGEVPA
1pot       156  ysgnttd.pkeieaaynelkklmpnvaafnsdnpANPYME.....GEVNL

1gggA      152  Hdtpnily.fiktagn...gqfkavg..dsleaqq.....ygiafpk...
yqix_bacsu 153  Iedivaeg.yfksndd...lqgfvip..dakaeeag....saiafrk...
fliy_ecoli 154  Vdrlaald.lvkktnd....tlavtg..eafsrqe.....sgvalrk...
yckk_bacsu 151  Ndklavln.ylktsgn...knvkiaf..etgepqs.....tyftfrk...
yxem_bacsu 154  Nsrtvlia.qikktgl....plklag..dpivyeq.....vafpfak.dd
hisp_neigo 153  Sdsavian.yvknnpa...kgmdfvtl.pdftteh.....ygiavrk...
path_vibha 152  Mdrlsale.likktgl....plqlag..epfetiq.....nawpfvd.ne
arti_ecoli 152  Gdtavvhe.wlkdnp.....klvvvg..dkvtdkdyfgtglgiavrq...
arti_haein 148  Gdtavlad.miskep.....eiqfig..ekvtnkkyfgnglgiamhk...
lapt_pasha 146  Gdvpvlae.markhe.....gldfvg..ekinnpnyfgdglgiathl...
artj_ecoli 151  Gdtavvne.wlktnp.....qlgvat..ekvtdpqyfgtglgiavrp...
1lst       160  Qdevaasegflkqpag...keyafag..psvkdkkyfgdgtgvglrk...
hisj_ecoli 160  Qdevaagegflkqpvg...kdykfgg..psvkdeklfgvgtgmglrk...
occt_agrt6 182  Anatvlaa.aiekpem...kgaklvg..plfsgge.fgv.vavglrk...
noct_agrt5 178  Asvsflkp.ltdkpdn...kdlkmfg..prmtggl.fgkgvgvgirk...
1sbp       191  Aweneallatnelgk....dkfeivt..psesil....aeptvsvvdkvv
1wod       165  Givygsda.vaskg.....vkvvatf..pedshkk...veypvavve...
1mrp       190  Alinnyywynlakekgvenlksrlyfvrhqdpgal...vsysgaavl...
1pot       200  Gmiwngsa.fvarqagt...pidvvw..pkegg.....ifwmdslai..p

1gggA      188  gsdeLRDKVNGALKTLrengtyneiy.kkwfgt
yqix_bacsu 190  ds.eLTDKFNKALKEMedngeleklk.kkwftg
fliy_ecoli 189  gnedLLKAVNDAIAEMqkdgtlqals.ekwfga
yckk_bacsu 187  gsgeVVDQVNKALKEMkedgtlskis.kkwfge
yxem_bacsu 191  ahdkLRKKVNKALDELrkdgtlkkls.ekyfne
hisp_neigo 190  gdeaTVKMLNDALEKVresgeydkiy.akyfak
path_vibha 189  kgrkLQAEVNKALAEMradgtvekis.vkwfga
arti_ecoli 191  gnteLQQKLNTALEKVkkdgtyetiy.nkwfqk
arti_haein 187  snkdLAAQLNKGLAAIkangeyqkiy.dkwitk
lapt_pasha 185  knqvLVDQFNAALKTIkengeyqkiy.dkwmgg
artj_ecoli 190  dnkaLLEKLNNALAAIkadgtyqkis.dqwfpq
1lst       202  ddteLKAAFDKALTELrqdgtydkma.kkyfdf
hisj_ecoli 202  edneLREALNKAFAEMradgtyekla.kkyfdf
occt_agrt6 221  edtaLKADFDAAIKAAsedgtiktls.lkwfkv
noct_agrt5 218  edadLKALFDKAIDAAiadgtvqkls.qqwfgy
1sbp       231  ekkdTKAVAEAYLKYLys.pegqeiaaknfyrp
1wod       201  ..ghNNATVKAFYDYLkg.pqaaeif.krygft
1mrp       234  kaskNQAEAQKFVDFLas.kkgqeal.vaarey
1pot       237  anakNKEGALKLINFLlr.pdvakqv.aetigy

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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