1pysA - reference 1


Name                 phenylalanyl-trna synthetase		

Number of sequences              4
Alignment Length                 280
Longest Sequence                 266
Shortest Sequence                237
Average Percent Identity         44
Maximum Percent Identity         54
Minimum Percent Identity         35

Sequence Name    SWISSPROT Accession
SYFA_THETH           P27001         
SYFA_HAEIN           P43819         
SYFA_BACSU           P17921         
SYFA_MYCGE           P47436         

Family   SYFA_THETH SYFA_HAEIN SYFA_BACSU SYFA_MYCGE


SYFA_THETH   1  rVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNF
SYFA_HAEIN   1  rVDVSLPGRKVETGGLHPVTMTINRVTKFFSELGFSVENGPEIESDYYNF
SYFA_BACSU   1  .IDVTLPGNPVAVGGRHPLTVVIEEIEDLFIGMGYTVEEGPEVETDYYNF
SYFA_MYCGE   1  sLDVMLPATEFTNGSNNALYQVIDNLVEYFKSFLFTINFDSELTSISDCF

SYFA_THETH  51  DALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQV
SYFA_HAEIN  51  DALNIPKHHPARADHDTFWFNPE...............LLLRTQTSGVQI
SYFA_BACSU  50  ESLNLPKEHPARDMQDSFYITEE...............TLMRTQTSPVQT
SYFA_MYCGE  51  DLLNIPKDHSSRNESDSFYIDKT...............SLLRTHCTATTL

SYFA_THETH 101  RYMva....htPPFRIVVPGRVFRFEqtdaTHEAVFHQLEGLVVGEGIAM
SYFA_HAEIN  86  RTMek....mqPPIRIMAPGRVYRND.ydqTHTPMFHQIELLYVDKKANF
SYFA_BACSU  85  RTMek..hegkGPVKIICPGKVYRRDnddaTHSHQFMQIEGLVVDKNISM
SYFA_MYCGE  86  KAVrtskktnnPDIRVVSLGAVFRNDsddaTHSHQFTQLDFMWIKKGLSL

SYFA_THETH 147  AHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVw..........
SYFA_HAEIN 131  TELKGLLHDFLRAFFEEDLQVRFRPSYFPFTEPSAEVDVm..........
SYFA_BACSU 133  SDLKGTLELVAKKMFGQDREIRLRPSFFPFTEPSVEVDVtcfkcggngcs
SYFA_MYCGE 136  ANLKWFINNMITHFFGENTFTRFRLSHFPFTEPSFEIDIrcwlc.qngcs

SYFA_THETH 187  wpeggKWLELGGAGMVHPKVFQAVdayrerlglppayrgvtGFAFGLGVE
SYFA_HAEIN 171  .gkngKWLEVLGCGMVHPNVLRNVgidpney.........sGFAVGMGVE
SYFA_BACSU 183  vckgtGWIEILGAGMVHPNVLKMAgfdpkey.........qGFAFGMGVE
SYFA_MYCGE 185  ickqtKWIEILGAGIIHPQVMNNMgigdten........itGIAAGIGIE

SYFA_THETH 237  RLAMLRYGIPDIRYFFGGRLKFLEQFKgvl
SYFA_HAEIN 211  RLTMLRYNVTDLRSFFENDLRFLKQFK...
SYFA_BACSU 224  RIAMLKYGIDDIRHFYTNDVRFISQFK...
SYFA_MYCGE 227  RLAMLKYGIDDIRDFYDNNFKFLTQF....

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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