S51 - reference 5


Name                 nuclear receptor

Number of sequences              15
Alignment Length                 371
Longest Sequence                 301
Shortest Sequence                227
Average Percent Identity         21
Maximum Percent Identity         49
Minimum Percent Identity         12

Sequence Name    SWISSPROT Accession
RRXA_HUMAN           P19793         
USP_DROME            P20153         
7UP1_DROME           P16375         
ESTR_CHICK           P06212         
ERR2_HUMAN           P11475         
HNF4_RAT             P22449         
VDR_HUMAN            P11473         
NGFI_RAT             P22829         
THA1_HUMAN           P21205         
E75A_DROME           P17671         
ROR1_HUMAN           P35397         
RRA1_HUMAN           P10276         
PPAR_HUMAN           Q07869         
PRGR_CHICK           P07812         
TLL_DROME            P18102         

Family   RRXA_HUMAN USP_DROME 7UP1_DROME ESTR_CHICK ERR2_HUMAN HNF4_RAT VDR_HUMAN NGFI_RAT THA1_HUMAN E75A_DROME ROR1_HUMAN RRA1_HUMAN PPAR_HUMAN PRGR_CHICK TLL_DROME


RRXA_HUMAN   1  .sanedmpVERIleaelavep....ktetyveanmg..............
USP_DROME    1  nsvsrdfsIERIieaeqraetqcgdraltflrvgp...............
7UP1_DROME   1  ghsylssyISLLlraepy.......ptsrygqcmqp..............
ESTR_CHICK   1  lsltaeqmVSALleae.........ppivyseydpnrp............
ERR2_HUMAN   1  akkpltkiVSYLlvae.........pdklyamppddvp............
HNF4_RAT     1  yedsslpsINALlqaevlsqqit.spisgingdirak.............
VDR_HUMAN    1  lseeqqriIAILldahhkty......dptysdfcqfrppvrvndgggshp
NGFI_RAT     1  pdasptnlLTSLirahldsgpn..takldyskfqelvlp...........
THA1_HUMAN   1  ptpeewdlIHIAteahrstna....qgshwkqrrkflpdd.igqspivsm
E75A_DROME   1  elddqprlLAAVlrahlet........ceftkekvsamrqrardcpsysm
ROR1_HUMAN   1  smaelehlAQNIskshlet........cqylreelqqitwqtflqeeien
RRA1_HUMAN   1  ltpevgelIEKVrkahqetfp....alcqlgkyttnnsseqr........
PPAR_HUMAN   1  etadlkslakriyeaylkn........fnmnkvkarvilsgkasnnppfv
PRGR_CHICK   1  eipfvppmisvlrgie.........pevvyagydntkp............
TLL_DROME    1  dlsvprvphhpvhqghhgffs....ptaaymnalatralp..........

RRXA_HUMAN  32  ..................................................
USP_DROME   36  ..................................................
7UP1_DROME  30  ..................................................
ESTR_CHICK  30  ..................................................
ERR2_HUMAN  30  ..................................................
HNF4_RAT    37  ..................................................
VDR_HUMAN   45  srpnsrhtpsfsgdsssscsdhcitssdmmdsssfsnldlseedsddpsv
NGFI_RAT    38  ..................................................
THA1_HUMAN  46  p.................................................
E75A_DROME  43  ptllacp...........................................
ROR1_HUMAN  43  y.................................................
RRA1_HUMAN  39  ..................................................
PPAR_HUMAN  43  ihdmetlcmaektlvaklvang...........................i
PRGR_CHICK  30  ..................................................
TLL_DROME   37  ..................................................

RRXA_HUMAN  32  lnpsspndpvtnicqaadkqLFTLVEWAKRIPHFSELPLDDQvillragw
USP_DROME   36  ystvqpdgavsalcqvvnkqLFQMVEYARMMPHFAQVPLDDQvillkaaw
7UP1_DROME  30  ....nnimgidnicelaarlLFSAVEWAKNIPFFPELQVTDQvallrlvw
ESTR_CHICK  30  ...fneasmmtlltnladreLVHMINWAKRVPGFVDLTLHDQvhllecaw
ERR2_HUMAN  30  ...egdikalttlcdladreLVFLISWAKHIPGFSNLTLGDQmsllqsaw
HNF4_RAT    37  .....riasitdvcesmkeqLLVLVEWAKYIPAFCELLLDDQvallraha
VDR_HUMAN   95  tlelsqlsmlphladlvsysIQKVIGFAKMIPGFRDLTSEDQivllkssa
NGFI_RAT    38  rfgkedagdvqqfydllsgsLDVIRKWAEKIPGFIELSPGDQdlllesaf
THA1_HUMAN  47  dgdkvdleafseftkiitpaITRVVDFAKKLPMFSELPCEDQiillkgcc
E75A_DROME  50  lnpapelqseqefsqrfahvIRGVIDFAGMIPGFQLLTQDDKftllkagl
ROR1_HUMAN  44  qnkqrev.mwqlcaikiteaIQYVVEFAKRIDGFMELCQNDQivllkags
RRA1_HUMAN  39  ..vsldidlwdkfselstkcIIKTVEFAKQLPGFTTLTIADQitllkaac
PPAR_HUMAN  66  qnkevevrifhccqctsvetVTELTEFAKAIPAFANLDLNDQvtllkygv
PRGR_CHICK  30  ...etpsslltslnhlcerqLLCVVKWSKLLPGFRNLHIDDQitliqysw
TLL_DROME   37  ..ptpplmaaehiketaaehLFKNVNWIKSVRAFTELPMPDQlllleesw

RRXA_HUMAN  82  nelliasfshrsiavkd...........................gillat
USP_DROME   86  iellianvawcsivslddggagggggglghdgsferrspglqpqqlflnq
7UP1_DROME  76  selfvlnasqcsmplhv...........................apllaa
ESTR_CHICK  77  leilmiglvwrsmehpg...........................kllfap
ERR2_HUMAN  77  meililgivyrslpydd...........................klayae
HNF4_RAT    82  gehlllgatkrsmvfkd...........................vlllgn
VDR_HUMAN  145  ievimlrsnesftmddm...........................swtcgn
NGFI_RAT    88  lelfilrlayrskpgeg...........................klifcs
THA1_HUMAN  97  meimslraavrydpesd...........................tltlsg
E75A_DROME 100  fdalfvrlicmfdssin..........................siiclng
ROR1_HUMAN  93  levvfirmcrafdsqnn...........................tvyfdg
RRA1_HUMAN  87  ldililrictrytpeqd...........................tmtfsd
PPAR_HUMAN 116  yeaifamlssvmnkdgm...........................lvaygn
PRGR_CHICK  77  mslmvfamgwrsykhvsgq.........................mlyfap
TLL_DROME   85  keffilamaqylmpmnfa.........................aqllfvy

RRXA_HUMAN 105  .glhvhrnsahsa.gvgaifdrvltelvskMRDMQMDKTELGCLRAIVLF
USP_DROME  136  .sfsyhrnsaika.gvsaifdrilselsvkMKRLNLDRRELSCLKAIILY
7UP1_DROME  99  aglhaspmaadrv.vafmdhirifqeqvekLKALHVDSAEYSCLKAIVLF
ESTR_CHICK 100  .nllldrnqgkcv.egmveifdmllataarFRMMNLQGEEFVCLKSIILL
ERR2_HUMAN 100  .dyimdeehsrlv..gllelyrailqlvrrYKKLKVEKEEFVMLKALALA
HNF4_RAT   105  .dyivprhcpela.emsrvsirildelvlpFQELQIDDNEYACLKAIIFF
VDR_HUMAN  168  .qdykyrvsdvtkaghslelieplikfqvgLKKLNLHEEEHVLLMAICIV
NGFI_RAT   111  .glvlhrlqcar...gfgdwidnilafsrsLHSLGVDVPAFACLSALVLI
THA1_HUMAN 120  .emavkreqlkng..glgvvsdaifelgksLSAFNLDDTEVALLQAVLLM
E75A_DROME 124  ..qvmrrdaiqng.anarflvdstfnfaerMNSMNLTDAEIGLFCAIVLI
ROR1_HUMAN 116  ..kyaspdvfksl..gcedfisfvfefgksLCSMHLTEDEIALFSAFVLM
RRA1_HUMAN 110  .gltlnrtqmhna..gfgpltdlvfafanqLLPLEMDDAETGLLSAICLI
PPAR_HUMAN 139  ..gfitreflkslrkpfcdimepkfdfamkFNALELDDSDISLFVAAIIC
PRGR_CHICK 102  .dlilneqrmkes..sfyslclsmwqlpqeFVRLQVSQEEFLCMKALLLL
TLL_DROME  110  ..esenanreimg..mvtrevhafqevlnqLCHLNIDSTEYECLRAISLF

RRXA_HUMAN 153  np.............................dskGLSNPAEVEALREKVY
USP_DROME  184  np.............................dirGIKSRAEIEMCREKVY
7UP1_DROME 148  tt.............................dacGLSDVTHIESLQEKSQ
ESTR_CHICK 148  nsgvytflss.....................tlkSLEERDYIHRVLDKIT
ERR2_HUMAN 147  ns.............................dsmYIENLEAVQKLQDLLH
HNF4_RAT   153  dp.............................dakGLSDPGKIKRLRSQVQ
VDR_HUMAN  217  sp.............................drpGVQDAALIEAIQDRLS
NGFI_RAT   157  t..............................drhGLQDPRRVEELQNRIA
THA1_HUMAN 167  st.............................drsGLLCVDKIEKSQEAYL
E75A_DROME 171  tp.............................drpGLRNLELIEKMYSRLK
ROR1_HUMAN 162  sa.............................drsWLQEKVKIEKLQQKIQ
RRA1_HUMAN 157  cg.............................drqDLEQPDRVDMLQEPLL
PPAR_HUMAN 187  cg.............................drpGLLNVGHIEKMQEGIV
PRGR_CHICK 149  nti............................pleGLRSQSQFDEMRTSYI
TLL_DROME  156  rksppsasstedlanssiltgsgspnssasaesrGLLESGKVAAMHNDAR

RRXA_HUMAN 174  ASLeayc.khky.peqp.grfa...klllrlpal.rsiglkclehlfffk
USP_DROME  205  ACLdehc.rleh.pgdd.grfa...qlllrlpal.rsislkcqdhlflfr
7UP1_DROME 169  CALeeyc.rtqy.pnqp.trfg...klllrlpsl.rtvssqvieqlffvr
ESTR_CHICK 177  DTLihlmaksglslqqqhrrla...qlllilshi.rhmsnkgmehlynmk
ERR2_HUMAN 168  EALqdye.lsqr.heep.rrag...kllltlpll.rqtaakavqhfysvk
HNF4_RAT   174  VSLedyi.ndrq.ydsr.grfg...elllllptl.qsitwqmieqiqfik
VDR_HUMAN  238  NTLqtyi.rcrhpppgshllya...kmiqkladl.rslneehskqyrcls
NGFI_RAT   177  SCLkehm.aavagdpqpascls...rllgklpel.rtlctqglqrifclk
THA1_HUMAN 188  LAFehyv.nhrk.hnip.hfwp...kllmkvtdl.rmigachasrflhmk
E75A_DROME 192  GCLqyiv.aqnr.pdqp.efla...klletmpdl.rtlstlhteklvvfr
ROR1_HUMAN 183  LALqhvl.qknh..red.gilt...klickvstl.ralcgrhteklmafk
RRA1_HUMAN 178  EALkvyv.rkrr.psrp.hmfp...kmlmkitdl.rsisakgaervitlk
PPAR_HUMAN 208  HVLrlhl.qsnh..pddiflfp...kllqkmadl.rqlvtehaqlvqiik
PRGR_CHICK 171  RELvkaiglrqkgvvansqrfyqltklmdsmhdlvkqlhlfclntflqsr
TLL_DROME  206  SALhnyi.qrth.psqp.mrfq...tllgvvqlm.hkvssftieelffrk

RRXA_HUMAN 217  ligd....tpidtflmemlea
USP_DROME  248  itsd....rpleelfleqlea
7UP1_DROME 212  lvgk....tpietlirdmlls
ESTR_CHICK 223  cknv....vplydlllemlda
ERR2_HUMAN 211  lqgk....vpmhklflemlea
HNF4_RAT   217  lfgm....akidnllqemllg
VDR_HUMAN  283  fqpec..smkltplvlevfgn
NGFI_RAT   222  ledl....vppppivdkifmd
THA1_HUMAN 231  vecpt...elfpplflevfed
E75A_DROME 235  tehkellrqqmwsmedgnnsd
ROR1_HUMAN 225  aiypdivrlhfpplykelfts
RRA1_HUMAN 221  meip....gsmppliqemlen
PPAR_HUMAN 251  ktesd...aalhpllqeiyrd
PRGR_CHICK 221  als.....vefpemmseviaa
TLL_DROME  249  tigd....itivrlisdmysq

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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