1wit - reference 3
Name twitchin
Number of sequences 19
Alignment Length 115
Longest Sequence 100
Shortest Sequence 82
Average Percent Identity 22
Maximum Percent Identity 71
Minimum Percent Identity 10
Sequence Name SWISSPROT Accession
1wit Q23550
cpsf_chick P16419
cpss_human Q00872
pgbm_human P98160
vca1_mouse P29533
1tlk P56276
dcc_human P43146
ptpf_human P10586
ptpd_human P23468
iml2_drome Q09024
nca2_xenla P36335
lar_drome P16621
caml_rat Q05695
2ncm P13596
un52_caeel Q06561
1hnf P06729
cd2_horse P37998
cd2_rat P08921
1vcaA P19320
Family 1wit cpsf_chick cpss_human pgbm_human vca1_mouse
Family 1tlk dcc_human ptpf_human ptpd_human iml2_drome nca2_xenla lar_drome caml_rat 2ncm un52_caeel
Family 1hnf cd2_horse cd2_rat
Family 1vcaA
1wit 1 lkpkiltasrKIKIKAGFTHNLEVDFIGapd..PTATWTVgds.gAALap
cpsf_chick 1 ldcsgkaaenTIVVVAGNKVRLDVPISGepa..PTVTWKRg...dQLFta
cpss_human 1 .....ldadnTVTVIAGNKLRLEIPISGepp..PKAMWSRg...dKAIme
pgbm_human 1 .....vlpegPVWVKVGKAVTLECVSAGepr..SSARWTRisstpAKLeq
vca1_mouse 1 .kettiwvspSPILEEGSPVNLTCSSDGipa..PKILWSRqln.nGELqp
1tlk 1 vkpyftktilDMDVVEGSAARFDCKVEGypd..PEVMWFKd...dNPVke
dcc_human 1 vppwflnhpsNLYAYESMDIEFECTVSGkpv..PTVNWMKn...gDVVip
ptpf_human 1 skpvfikvpeDQTGLSGGVASFVCQATGepk..PRITWMKk...gKKVss
ptpd_human 1 tpprftrtpvDQTGVSGGVASFICQATGdpr..PKIVWNKk...gKKVsn
iml2_drome 1 .kprivytekTHLDLMGSNIQLPCRVHArpr..AEITWLNne..nKEIvq
nca2_xenla 1 .........vNATANMDESVVLSCDADGfpd..PEISWLKk...gEPIed
lar_drome 1 ..peiirkpqNQGVRVGGVASFYCAARGdpp..PSIVWRKn...gKKVsg
caml_rat 1 ...fptnsssHLVALQGQSLILECIAEGfpt..PTIKWLHp...sDPMpt
2ncm 1 rvlqvdivpsQGEISVGESKFFLCQVAGdakd.KDISWFSp..ngEKLsp
un52_caeel 1 .iiqvllevsSESPQIGDRAWFDCKVTGdps..AVISWTKe..gnDDLpp
1hnf 1 ......tnalETWGALGQDINLDIPSFQmsddiDDIKWEKts.dkKKIaq
cd2_horse 1 .......kniTILGALERDINLDIPAFQmsehvEDIQWSKg...kTKIak
cd2_rat 1 ..........TVWGALGHGINLNIPNFQmtddiDEVRWERgs...TLVae
1vcaA 1 .fkiettpesRYLAQIGDSVSLTCSTTGc..esPFFSWRTqi..dSPLng
1wit 48 .............elLVdaks.sTTSIFFPSAK.RADSGNYKLKVKNELg
cpsf_chick 46 ..........tegrvHIdsqa.dLSSFVIESAE.RSDEGRYCITVTNPVg
cpss_human 41 ..........gsgriRTesyp.dSSTLVIDIAE.RDDSGVYHINLKNEAg
pgbm_human 44 ...........rtygLMds....HTVLQISSAK.PSDAGTYVCLAQNALg
vca1_mouse 47 ...............LSe.....NTTLTFMSTK.RDDSGIYVCEGINEAg
1tlk 46 ...........srhfQIdydeegNCSLTISEVC.GDDDAKYTCKAVNSLg
dcc_human 46 ..........sdyfqIVg.....GSNLRILGVV.KSDEGFYQCVAENEAg
ptpf_human 46 ...........qrfeVIefddgaGSVLRIQPLRVQRDEAIYECTATNSLg
ptpd_human 46 ...........qrfeVIefddgsGSVLRIQPLRTPRDEAIYECVASNNVg
iml2_drome 46 ..........ghrhrVLa.....NGDLLISEIK.WEDMGNYKCIARNVVg
nca2_xenla 37 ...........geekISfned..KSEMTIYRVE.KEDEAEYSCIANNQAg
lar_drome 44 .........tqsrytVLeqpgg.ISILRIEPVRAGRDDAPYECVAENGVg
caml_rat 43 .............drVIyqnh..NKTLQLLNVG.EEDDGEYTCLAENSLg
2ncm 48 .........nqqrisVVwnddd.SSTLTIYNAN.IDDAGIYKCVVTAEDg
un52_caeel 46 ............naqVT......GGRLLFTDLK.EDNAGVYRCVAKTKAg
1hnf 44 frkeketfkekdtykLFk.....NGTLKIKHLK.TDDQDIYKVSIYDTKg
cd2_horse 41 fkngsmtfqkdktyeVLk.....NGTLKIKHLE.RIHEGTYKVDAYDSDg
cd2_rat 38 fkrkmkpflksgafeILa.....NGDLKIKNLT.RDDSGTYNVTVYSTNg
1vcaA 46 ..............kVTne..gtTSTLTMNPVS.FGNEHSYLCTATCES.
1wit 83 ..edEAIFEVIvq..
cpsf_chick 84 ..edSATLHVRv...
cpss_human 79 ..eaHASIKVKv...
pgbm_human 78 ..taQKQVEVIv...
vca1_mouse 76 ..isRKSVELIi...
1tlk 84 ..eaTCTAELLvetm
dcc_human 80 ..naQTSAQLIvp..
ptpf_human 85 ..eiNTSAKLSv...
ptpd_human 85 ..eiSVSTRLTv...
iml2_drome 80 ...kDTADTFVyp..
nca2_xenla 73 ..eaEAIVLLKv...
lar_drome 84 ..daVSADATL....
caml_rat 77 ..saRHAYYVTve..
2ncm 87 .tqsEATVNVKifq.
un52_caeel 77 ..plQTRTVLNv...
1hnf 88 knvlEKIFDLKiq..
cd2_horse 85 knvlEETFHLSll..
cd2_rat 82 trilDKALDLRil..
1vcaA 78 .rklEKGIQVEiy..
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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