S51 - reference 5
Name nuclear receptor
Number of sequences 15
Alignment Length 371
Longest Sequence 301
Shortest Sequence 227
Average Percent Identity 21
Maximum Percent Identity 49
Minimum Percent Identity 12
Sequence Name SWISSPROT Accession
RRXA_HUMAN P19793
USP_DROME P20153
7UP1_DROME P16375
ESTR_CHICK P06212
ERR2_HUMAN P11475
HNF4_RAT P22449
VDR_HUMAN P11473
NGFI_RAT P22829
THA1_HUMAN P21205
E75A_DROME P17671
ROR1_HUMAN P35397
RRA1_HUMAN P10276
PPAR_HUMAN Q07869
PRGR_CHICK P07812
TLL_DROME P18102
Family RRXA_HUMAN USP_DROME 7UP1_DROME ESTR_CHICK ERR2_HUMAN HNF4_RAT VDR_HUMAN NGFI_RAT THA1_HUMAN E75A_DROME ROR1_HUMAN RRA1_HUMAN PPAR_HUMAN PRGR_CHICK TLL_DROME
RRXA_HUMAN 1 .sanedmpVERIleaelavep....ktetyveanmg..............
USP_DROME 1 nsvsrdfsIERIieaeqraetqcgdraltflrvgp...............
7UP1_DROME 1 ghsylssyISLLlraepy.......ptsrygqcmqp..............
ESTR_CHICK 1 lsltaeqmVSALleae.........ppivyseydpnrp............
ERR2_HUMAN 1 akkpltkiVSYLlvae.........pdklyamppddvp............
HNF4_RAT 1 yedsslpsINALlqaevlsqqit.spisgingdirak.............
VDR_HUMAN 1 lseeqqriIAILldahhkty......dptysdfcqfrppvrvndgggshp
NGFI_RAT 1 pdasptnlLTSLirahldsgpn..takldyskfqelvlp...........
THA1_HUMAN 1 ptpeewdlIHIAteahrstna....qgshwkqrrkflpdd.igqspivsm
E75A_DROME 1 elddqprlLAAVlrahlet........ceftkekvsamrqrardcpsysm
ROR1_HUMAN 1 smaelehlAQNIskshlet........cqylreelqqitwqtflqeeien
RRA1_HUMAN 1 ltpevgelIEKVrkahqetfp....alcqlgkyttnnsseqr........
PPAR_HUMAN 1 etadlkslakriyeaylkn........fnmnkvkarvilsgkasnnppfv
PRGR_CHICK 1 eipfvppmisvlrgie.........pevvyagydntkp............
TLL_DROME 1 dlsvprvphhpvhqghhgffs....ptaaymnalatralp..........
RRXA_HUMAN 32 ..................................................
USP_DROME 36 ..................................................
7UP1_DROME 30 ..................................................
ESTR_CHICK 30 ..................................................
ERR2_HUMAN 30 ..................................................
HNF4_RAT 37 ..................................................
VDR_HUMAN 45 srpnsrhtpsfsgdsssscsdhcitssdmmdsssfsnldlseedsddpsv
NGFI_RAT 38 ..................................................
THA1_HUMAN 46 p.................................................
E75A_DROME 43 ptllacp...........................................
ROR1_HUMAN 43 y.................................................
RRA1_HUMAN 39 ..................................................
PPAR_HUMAN 43 ihdmetlcmaektlvaklvang...........................i
PRGR_CHICK 30 ..................................................
TLL_DROME 37 ..................................................
RRXA_HUMAN 32 lnpsspndpvtnicqaadkqLFTLVEWAKRIPHFSELPLDDQvillragw
USP_DROME 36 ystvqpdgavsalcqvvnkqLFQMVEYARMMPHFAQVPLDDQvillkaaw
7UP1_DROME 30 ....nnimgidnicelaarlLFSAVEWAKNIPFFPELQVTDQvallrlvw
ESTR_CHICK 30 ...fneasmmtlltnladreLVHMINWAKRVPGFVDLTLHDQvhllecaw
ERR2_HUMAN 30 ...egdikalttlcdladreLVFLISWAKHIPGFSNLTLGDQmsllqsaw
HNF4_RAT 37 .....riasitdvcesmkeqLLVLVEWAKYIPAFCELLLDDQvallraha
VDR_HUMAN 95 tlelsqlsmlphladlvsysIQKVIGFAKMIPGFRDLTSEDQivllkssa
NGFI_RAT 38 rfgkedagdvqqfydllsgsLDVIRKWAEKIPGFIELSPGDQdlllesaf
THA1_HUMAN 47 dgdkvdleafseftkiitpaITRVVDFAKKLPMFSELPCEDQiillkgcc
E75A_DROME 50 lnpapelqseqefsqrfahvIRGVIDFAGMIPGFQLLTQDDKftllkagl
ROR1_HUMAN 44 qnkqrev.mwqlcaikiteaIQYVVEFAKRIDGFMELCQNDQivllkags
RRA1_HUMAN 39 ..vsldidlwdkfselstkcIIKTVEFAKQLPGFTTLTIADQitllkaac
PPAR_HUMAN 66 qnkevevrifhccqctsvetVTELTEFAKAIPAFANLDLNDQvtllkygv
PRGR_CHICK 30 ...etpsslltslnhlcerqLLCVVKWSKLLPGFRNLHIDDQitliqysw
TLL_DROME 37 ..ptpplmaaehiketaaehLFKNVNWIKSVRAFTELPMPDQlllleesw
RRXA_HUMAN 82 nelliasfshrsiavkd...........................gillat
USP_DROME 86 iellianvawcsivslddggagggggglghdgsferrspglqpqqlflnq
7UP1_DROME 76 selfvlnasqcsmplhv...........................apllaa
ESTR_CHICK 77 leilmiglvwrsmehpg...........................kllfap
ERR2_HUMAN 77 meililgivyrslpydd...........................klayae
HNF4_RAT 82 gehlllgatkrsmvfkd...........................vlllgn
VDR_HUMAN 145 ievimlrsnesftmddm...........................swtcgn
NGFI_RAT 88 lelfilrlayrskpgeg...........................klifcs
THA1_HUMAN 97 meimslraavrydpesd...........................tltlsg
E75A_DROME 100 fdalfvrlicmfdssin..........................siiclng
ROR1_HUMAN 93 levvfirmcrafdsqnn...........................tvyfdg
RRA1_HUMAN 87 ldililrictrytpeqd...........................tmtfsd
PPAR_HUMAN 116 yeaifamlssvmnkdgm...........................lvaygn
PRGR_CHICK 77 mslmvfamgwrsykhvsgq.........................mlyfap
TLL_DROME 85 keffilamaqylmpmnfa.........................aqllfvy
RRXA_HUMAN 105 .glhvhrnsahsa.gvgaifdrvltelvskMRDMQMDKTELGCLRAIVLF
USP_DROME 136 .sfsyhrnsaika.gvsaifdrilselsvkMKRLNLDRRELSCLKAIILY
7UP1_DROME 99 aglhaspmaadrv.vafmdhirifqeqvekLKALHVDSAEYSCLKAIVLF
ESTR_CHICK 100 .nllldrnqgkcv.egmveifdmllataarFRMMNLQGEEFVCLKSIILL
ERR2_HUMAN 100 .dyimdeehsrlv..gllelyrailqlvrrYKKLKVEKEEFVMLKALALA
HNF4_RAT 105 .dyivprhcpela.emsrvsirildelvlpFQELQIDDNEYACLKAIIFF
VDR_HUMAN 168 .qdykyrvsdvtkaghslelieplikfqvgLKKLNLHEEEHVLLMAICIV
NGFI_RAT 111 .glvlhrlqcar...gfgdwidnilafsrsLHSLGVDVPAFACLSALVLI
THA1_HUMAN 120 .emavkreqlkng..glgvvsdaifelgksLSAFNLDDTEVALLQAVLLM
E75A_DROME 124 ..qvmrrdaiqng.anarflvdstfnfaerMNSMNLTDAEIGLFCAIVLI
ROR1_HUMAN 116 ..kyaspdvfksl..gcedfisfvfefgksLCSMHLTEDEIALFSAFVLM
RRA1_HUMAN 110 .gltlnrtqmhna..gfgpltdlvfafanqLLPLEMDDAETGLLSAICLI
PPAR_HUMAN 139 ..gfitreflkslrkpfcdimepkfdfamkFNALELDDSDISLFVAAIIC
PRGR_CHICK 102 .dlilneqrmkes..sfyslclsmwqlpqeFVRLQVSQEEFLCMKALLLL
TLL_DROME 110 ..esenanreimg..mvtrevhafqevlnqLCHLNIDSTEYECLRAISLF
RRXA_HUMAN 153 np.............................dskGLSNPAEVEALREKVY
USP_DROME 184 np.............................dirGIKSRAEIEMCREKVY
7UP1_DROME 148 tt.............................dacGLSDVTHIESLQEKSQ
ESTR_CHICK 148 nsgvytflss.....................tlkSLEERDYIHRVLDKIT
ERR2_HUMAN 147 ns.............................dsmYIENLEAVQKLQDLLH
HNF4_RAT 153 dp.............................dakGLSDPGKIKRLRSQVQ
VDR_HUMAN 217 sp.............................drpGVQDAALIEAIQDRLS
NGFI_RAT 157 t..............................drhGLQDPRRVEELQNRIA
THA1_HUMAN 167 st.............................drsGLLCVDKIEKSQEAYL
E75A_DROME 171 tp.............................drpGLRNLELIEKMYSRLK
ROR1_HUMAN 162 sa.............................drsWLQEKVKIEKLQQKIQ
RRA1_HUMAN 157 cg.............................drqDLEQPDRVDMLQEPLL
PPAR_HUMAN 187 cg.............................drpGLLNVGHIEKMQEGIV
PRGR_CHICK 149 nti............................pleGLRSQSQFDEMRTSYI
TLL_DROME 156 rksppsasstedlanssiltgsgspnssasaesrGLLESGKVAAMHNDAR
RRXA_HUMAN 174 ASLeayc.khky.peqp.grfa...klllrlpal.rsiglkclehlfffk
USP_DROME 205 ACLdehc.rleh.pgdd.grfa...qlllrlpal.rsislkcqdhlflfr
7UP1_DROME 169 CALeeyc.rtqy.pnqp.trfg...klllrlpsl.rtvssqvieqlffvr
ESTR_CHICK 177 DTLihlmaksglslqqqhrrla...qlllilshi.rhmsnkgmehlynmk
ERR2_HUMAN 168 EALqdye.lsqr.heep.rrag...kllltlpll.rqtaakavqhfysvk
HNF4_RAT 174 VSLedyi.ndrq.ydsr.grfg...elllllptl.qsitwqmieqiqfik
VDR_HUMAN 238 NTLqtyi.rcrhpppgshllya...kmiqkladl.rslneehskqyrcls
NGFI_RAT 177 SCLkehm.aavagdpqpascls...rllgklpel.rtlctqglqrifclk
THA1_HUMAN 188 LAFehyv.nhrk.hnip.hfwp...kllmkvtdl.rmigachasrflhmk
E75A_DROME 192 GCLqyiv.aqnr.pdqp.efla...klletmpdl.rtlstlhteklvvfr
ROR1_HUMAN 183 LALqhvl.qknh..red.gilt...klickvstl.ralcgrhteklmafk
RRA1_HUMAN 178 EALkvyv.rkrr.psrp.hmfp...kmlmkitdl.rsisakgaervitlk
PPAR_HUMAN 208 HVLrlhl.qsnh..pddiflfp...kllqkmadl.rqlvtehaqlvqiik
PRGR_CHICK 171 RELvkaiglrqkgvvansqrfyqltklmdsmhdlvkqlhlfclntflqsr
TLL_DROME 206 SALhnyi.qrth.psqp.mrfq...tllgvvqlm.hkvssftieelffrk
RRXA_HUMAN 217 ligd....tpidtflmemlea
USP_DROME 248 itsd....rpleelfleqlea
7UP1_DROME 212 lvgk....tpietlirdmlls
ESTR_CHICK 223 cknv....vplydlllemlda
ERR2_HUMAN 211 lqgk....vpmhklflemlea
HNF4_RAT 217 lfgm....akidnllqemllg
VDR_HUMAN 283 fqpec..smkltplvlevfgn
NGFI_RAT 222 ledl....vppppivdkifmd
THA1_HUMAN 231 vecpt...elfpplflevfed
E75A_DROME 235 tehkellrqqmwsmedgnnsd
ROR1_HUMAN 225 aiypdivrlhfpplykelfts
RRA1_HUMAN 221 meip....gsmppliqemlen
PPAR_HUMAN 251 ktesd...aalhpllqeiyrd
PRGR_CHICK 221 als.....vefpemmseviaa
TLL_DROME 249 tigd....itivrlisdmysq
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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