1lcf - reference 1
Name lactoferrin
Number of sequences 6
Alignment Length 747
Longest Sequence 691
Shortest Sequence 662
Average Percent Identity 49
Maximum Percent Identity 63
Minimum Percent Identity 40
Sequence Name SWISSPROT Accession
1lcf P02788
trfe_rabit P19134
trf2_salsa P80429
trfe_xenla P20233
trfm_human P08582
1aov P56410
Family 1lcf trfe_rabit trf2_salsa trfe_xenla trfm_human 1aov
1lcf 1 .grrrsVQWCAVSNPEATKCFQWQRNMRkvr...gppVSCLKRDSPIQCI
trfe_rabit 1 ....ktVRWCAVNDHEASKCANFRDSMKkvlpedgprIICVKKASYLDCI
trf2_salsa 1 ......VKWCVKSEQELRKCHDLAAKVAe........FSCVRKDGSFECI
trfe_xenla 1 ..kekqVRWCVKSNSELKKCKDLVDTCKnk....eikLSCVEKSNTDECS
trfm_human 1 .....eVRWCATSDPEQHKCGNMSEAFReagi..qpsLLCVRGTSADHCV
1aov 1 appkttVRWCTISSAEEKKCNSLKDHMQqer....vtLSCVQKATYLDCI
1lcf 47 QAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYgterqprTHYYAVA
trfe_rabit 47 KAIAAHEADAVTLDAGLVHEAGLTPNNLKPVVAEFYgskenpkTFYYAVA
trf2_salsa 37 QAIKGGEADAITLDGGDIYTAGLTNYGLQPIIAEDYg..edsdTCYYAVA
trfe_xenla 45 TAIQEDHADAICVDGGDVYKGSLQPYNLKPIMAENYgshtetdTCYYAVA
trfm_human 44 QLIAAQEADAITLDGGAIYEAG.KEHGLKPVVGEVYd..qevgTSYYAVA
1aov 47 KAISNNEADAISLDGGQVFEAGLAPYKLKPIAAEVYersggstTSYYAVA
1lcf 97 VVKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIGTL..rpflnwtgppep
trfe_rabit 97 LVKKGSNFQLNELQGKKSCHTGLGRSAGWNIPIGLL....ycdlpeprkp
trf2_salsa 85 VAKKGTAFGFKTLRGKKSCHTGLGKSAGWNIPIGTLvtesqirwagiedr
trfe_xenla 95 VVKKSSKFTFDELKDKKSCHTGIGKTAGWNIIIGLLlerkllkwagpdse
trfm_human 91 VVRRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLvesgrlsvmgcd..
1aov 97 VVKKGTDFMIKDLRGKTSCHTGLGRSAGWNIPIGTLihrediewegiesg
1lcf 145 .ieaAVARFFSASCVPGAdkgqf.pnLCRLCAGt..genkcafssqePYF
trfe_rabit 143 .lekAVASFFSGSCVPCAdgadf.pqLCQLCPG.......cgcssvqPYF
trf2_salsa 135 pvesAVSDFFNASCAPGAtmg...skLCQLCKGd......csrshkePYY
trfe_xenla 145 twrnAVSKFFKASCVPGAke....pkLSQLCAGi..kehkcsrsnnePYY
trfm_human 139 .vlkAVSDYFGGSCVPGAgetsysesLCRLCRGdssgegvcdkspleRYY
1aov 147 iseqAVAKFFSASCVPGAtie...qkLCRQCKGd..aktkclrng..PYS
1lcf 191 SYSGAFKCLKDGAGDVAFIRESTVfedlsd........eaerDEYELLCP
trfe_rabit 184 GYSGAFKCLKDGLGDVAFVKQETIfenlps........kderDQYELLCL
trf2_salsa 176 DYAGAFQCLKDGAGDVAFIKPLAVp.............aaekASYELLCK
trfe_xenla 189 NYAGAFKCLQDDQGDVAFVKQSTVp.............eefhKDYELLCP
trfm_human 188 DYSGAFRCLAEGAGDVAFVKHSTVlentdgktlpswgqallsQDFELLCR
1aov 190 GYSGAFQCLKDGKGDVAFVKHTTVqenap..........eekDEYELLCL
1lcf 233 DNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLrqaqekfgkdk
trfe_rabit 226 DNTRKPVDEYEQCHLARVPSHAVVARSVDGKEDLIWELLnqaqehfgkdk
trf2_salsa 213 DGTRASIDSYKTCHLARVPAHAVVSRKDPELANRIYNKLvavk.......
trfe_xenla 226 DNTRKSIKEYKNCNLAKVPAHAVLTRGRDDKSKDIIEFLqeaq......k
trfm_human 238 DGSRADVTEWRQCHLARVPAHAVVVR.ADTDGGLIFRLLnegqrlfsheg
1aov 230 DGSRQPVDSYKTCNWARVAAHAVVAR.DDSKIDDIWSFLgmqayslgvdt
1lcf 283 spkfqlfgspsg....qKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAI
trfe_rabit 276 sgdfqlfssphg.....KNLLFKDSAYGFFKVPPRMDANLYLGYEYVTAV
trf2_salsa 256 ..dfnlfssdgya...aKNLMFKDSAQKLVQLPTTTDSFLYLGAEYMSTI
trfe_xenla 270 tqecklfsspvwg....RDLIFKDSAVSLIPLPSSMDSFLFLGADYFQCI
trfm_human 287 s.sfqmfsseayg...qKDLLFKDSTSELVPIATQT.YEAWLGHEYLHAM
1aov 279 tsdfhlfgppgkkdpvlKDLLFKDSAIMLKRVPELMDSQLYLGFEYYSAI
1lcf 329 QNLrks..eeevaarrarVVWCAVGEQELRKCNQWSgls.....egsVTC
trfe_rabit 321 RNLregicpdplqdeckaVKWCALSHHERLKCDEWSvts.....gglIEC
trf2_salsa 301 RSLkksqatgas...sraIKWCAVGHAEKGKCDTWTinsfadg.eskISC
trfe_xenla 316 QALkegvkeddsaa.qvkVRWCTQSKAEKTKCDDWTtis.....ggaIEC
trfm_human 332 KGLlcdpnrlpp.....yLRWCVLSTPEIQKCGDMAvafrrqrlkpeIQC
1aov 329 QSLrkdqltvgp..renkIQWCAVGKDEKSKCDRWSvvs.....ngeVEC
1lcf 372 SSASTTEDCIALVLKGEADAMSLDGGYVYTAGk.cglvpvlaenyksqqs
trfe_rabit 366 ESAETPEDCIAKIMNGEADAMSLDGGYVYIAGq.cglvpvlaenyestd.
trf2_salsa 347 QDAPTVEECIKKIMRKEADAIAVDGGEVYTAGk.cglvpvmveqydadl.
trfe_xenla 360 TEASTAEECIVQILKGDADAVTLDGGYMYTAGl.cglvpvmgeyydqddl
trfm_human 377 VSAKSPQHCMERIQAEQVDAVTLSGEDIYTAGkkyglvpaagehyaped.
1aov 372 TILDDNKDCIVKITKGEADAISLDGGFVYTAGv.cglvpvvgesyedetq
1lcf 421 sdpdpncvdrpve..gYLAVAVVRRsdt.sLTWNSVKGKKSCHTAVDRTA
trfe_rabit 414 ......ckkapee..gYLSVAVVKKsnp.dINWNNLEGKKSCHTAVDRTA
trf2_salsa 395 ......cs.apgeassYYAVAVAKKgs..gLTWKTLKGKRSCHTGLGRTA
trfe_xenla 409 tpcqrscsqakgv...YYAVAIVKKgt..qVSWSNLRGVKTCHTAVGRTA
trfm_human 426 ......ssns......YYVVAVVRRdsshaFTLDELRGKRSCHAGFGSPA
1aov 421 ......cskdeeqpayYFAVAVVKKss..aITWNNLQGKKSCHTAVGRTA
1lcf 468 GWNIPMGLLfnqT....GSCK....fdEYFSQSCAPgsdpr...SNLCAL
trfe_rabit 455 GWNIPMGLLynrI....NHCR....fdEFFRQGCAPgsqkn...SSLCEL
trf2_salsa 436 GWNIPMGLIhqeT....NDCD....ftKYFSKGCAPgsevg...SPFCAQ
trfe_xenla 454 GWNIPVGLItseT....ANCD....faSYVGESCAPgsdvk...SNLCAL
trfm_human 464 GWDVPVGALiqrGFIRPKDCDvltavsEFFNASCVPvnnpknypSSLCAL
1aov 463 GWNIPMGLIhnkT....GSCD....fdDYFSEGCAPgsppn...SRLCKL
1lcf 507 CIGdeqgen....kCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQ
trfe_rabit 494 CIGpsv........CAPNNREGYYGYTGAFRCLVE.KGDVAFVKSQTVLQ
trf2_salsa 475 CKGsgkarggdedrCKARSEEQYYGYTGAFRCLVEDAGDVAFIKHTIVPE
trfe_xenla 493 CIGdpeklserekkCSPSASEAYYGYSGAFRCLVE.KGQVGFAKHTTVFE
trfm_human 514 CVGdeqgrn....kCVGNSQERYYGYRGAFRCLVENAGDVAFVRHTTVFD
1aov 502 CQGsgenlle...kCVASSHEKYYGYTGALRCLVE.QGDVAFIKHSTVGE
1lcf 553 NTDGnnneaWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSR
trfe_rabit 535 NTGGrnsepWAKDLKEEDFELLCLDGTRKPVSEAHNCHLAKAPNHAVVSR
trf2_salsa 525 STDGngpd.WAKDLKSSDFELLCQDGTTQPVTKFSECHLAKVPAHAVITR
trfe_xenla 542 NTDGknpagWAKDLKSEDFELLCPDGSRAPVTDYKRCNLAEVPAHAVVTL
trfm_human 560 NTNGhnsepWAAELRSEDYELLCPNGARAEVSQFAACNLAQIPPHAVMVR
1aov 548 NVSGsnkddWAKGLTRDDFELLCTNGKRAKTMDYKTCHLAKVPTHAVVAR
1lcf 603 MDK.VerLKQVLLHQQAKFGrngsdcpdkFCLFQSe...tKNLLFNDNTE
trfe_rabit 585 KDK.AacVKQKLLDLQVEYGntvadcsskFCMFHSk...tKDLLFRDDTK
trf2_salsa 574 PET.RgdVVSILLELQAKFGssgsd..ssFRMFQSsv..eKNLLFKDSTK
trfe_xenla 592 PDK.ReqVAKIVVNQQSLYGrkgfq.kdiFQMFQStg..gKDLLFKDSTQ
trfm_human 610 PDTNIftVYGLLDKAQDLFGddhnk..ngFKMFDSsnyhgQDLLFKDATV
1aov 598 PEK.AnkIRELLEGQEKLFGlhgte.kerFMMFQSq...tKDLLFKALTK
1lcf 649 CLARLHGKTTYEKYLGPQYVAGItnlkk..cs..tsplleaceflrk
trfe_rabit 631 CLVDLRGKNTYEKYLGADYIKAVsnlrk..cs..tsrlleactfhk.
trf2_salsa 619 CLQEIPKGTKYQDFLGKEYMIAMqslrk..csdstsdlekactfhs.
trfe_xenla 638 CLLEIPSKTTMQEFLGDKYHTAVtslnk..cs..tsrllaactf...
trfm_human 658 RAVPVGEKTTYRGWLGLDYVAALegmssqqcs...............
1aov 643 CLVKLRQGITYKEFLGDEYYASVaslnt..cn..psdllqvctfled
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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