1ubi - reference 2


Name                 ubiquitin	cysteine	

Number of sequences              17
Alignment Length                 117
Longest Sequence                 97
Shortest Sequence                76
Average Percent Identity         32
Maximum Percent Identity         71
Minimum Percent Identity         11

Sequence Name    SWISSPROT Accession
1awd                 P56408         
fer1_anasp           P06543         
fer1_cyaca           P15789         
fer1_equar           P00235         
fer_medsa            P00220         
fer2_equte           P00236         
ferv_anava           P46047         
fer2_synp6           P08451         
dmpp_psepu           P19734         
memc_metca           P22868         
rfbi_salty           P26395         
xylz_psepu           P23101         
ascd_yerps           P37911         
yfae_ecoli           P37910         
1guaB                P10113         
2pia                 P33164         
1alo                 Q46509         

Family   1awd fer1_anasp fer1_cyaca fer1_equar fer_medsa fer2_equte ferv_anava fer2_synp6 dmpp_psepu memc_metca rfbi_salty xylz_psepu ascd_yerps yfae_ecoli
Family   1guaB
Family   2pia
Family   1alo


1awd         1  ......YKVTLkt.psg.eeTIECPEDTYILDAAEEA.gld.LPYSCRAG
fer1_anasp   1  ......FKVTLineaegtkhEIEVPDDEYILDAAEEQ.gyd.LPFSCRAG
fer1_cyaca   1  ......YKIQLvnqkegvdvTINCPGDQYILDAAEEQ.gvd.LPYSCRAG
fer1_equar   1  ......YKTVLkt.psg.efTLDVPEGTTILDAAEEA.gyd.LPFSCRAG
fer_medsa    1  ......YKVKLvt.peg.tqEFECPDDVYILDHAEEE.giv.LPYSCRAG
fer2_equte   1  ......YKVTLkt.pdg.diTFDVEPGERLIDIASEK..ad.LPLSCQAG
ferv_anava   1  ......YQVRLinkkraidiTIPVDENTTILDAAEQQ.die.LPFSCQSG
fer2_synp6   1  ......YQVEViy..qgqsqTFTADSDQSVLDSAQAA.gvd.LPASCLTG
dmpp_psepu   1  ......YNVTIe..ptg..eVIEVEDGQTILQAALRQ.gvw.LPFACGHG
memc_metca   1  ......HTITAvt.edgeslRFECRSDEDVITAALRQ.nif.LMSSCREG
rfbi_salty   1  ....msHIIKIf..psn..iEFSGREDESILDAALSA.gih.LEHSCKAG
xylz_psepu   1  ......HKVATdf.edgvtrFIDANTGETVADAAYRQ.gin.LPLDCRDG
ascd_yerps   1  .....sLNVKLh..psg..iIFTSDGTSTILDAALDS.nih.IEYSCKDG
yfae_ecoli   1  .....mARVTLri..tg.tqLLCQDEHPSLLAALESH.nva.VEYQCREG
1guaB        1  ......NTIRVfl.pnkqrtVVNVRNGMSLHDCLMKAlkvrgLQPEC...
2pia         1  arentpFTVRLs..rsg..tSFEIPANRSILEVLRDA.nvr.VPSSCESG
1alo         1  ......MIQKVit.vngieqNLFVDAEALLSDVLRQQlgltgVKVGCEQG

1awd        41  ACSSCAGKVEsgevdqsdqs.flddaqmg....kgfvl.....TCVAYPT
fer1_anasp  43  ACSTCAGKLVsgtvdqsdqs.fldddqie....agyvl.....TCVAYPT
fer1_cyaca  43  ACSTCAGKLVkgsvdqsdqs.fldeeqin....ngfil.....TCVAYPT
fer1_equar  41  ACSSCLGKVVsgsvdesegs.flddgqme....egfvl.....TCIAIPE
fer_medsa   41  SCSSCAGKVAagevnqsdgs.fldddqie....egwvl.....TCVAYAK
fer2_equte  40  ACSTCLGKIVsgtvdqsegs.flddeqie....qgyvl.....TCIAIPE
ferv_anava  43  SCSSCVAKVVegevdqseqv.fldeeqma....kgfiv.....LCVSYPR
fer2_synp6  41  VCTTCAARILsgevdqpdam.gvgpepak....qgytl.....LCVAYPR
dmpp_psepu  39  TCATCKVQVVegevdigeaspfalmdierd...erkvl.....ACCAIPL
memc_metca  42  GCATCKALCSegdydlkgcsvqalppeeee...eglvl.....LCRTYPK
rfbi_salty  41  DCGICESDLLagevvdskgnifg..........qgdkil....TCCCKPK
xylz_psepu  42  ACGACKCFAEsgryslgee..yiedalseaeaeqgyvl.....TCQMRAE
ascd_yerps  40  TCGSCKAILIsgevdsaent.flteedva....kgail.....TCCSKAK
yfae_ecoli  41  YCGSCRTRLVagqvd......wiaeplafiq..pgeil.....PCCCRAK
1guaB       41  ....CAVFRLlheh...................kgkkarldwnTDAASLI
2pia        45  TCGSCKTALCsgeadhrdm..vlrdde......kgtqim....VCVSRAK
1alo        44  QCGACSVILD........................gkvvr....ACVTKMK

1awd        81  S...DVTILThqeaaly
fer1_anasp  83  S...DVVIQThkeedl.
fer1_cyaca  83  S...DCVIQThqeeal.
fer1_equar  81  S...DLVIEThkeeel.
fer_medsa   81  S...DVTIEThkeeel.
fer2_equte  80  S...DVVIEThkedel.
ferv_anava  83  S...DCTIRThqepyl.
fer2_synp6  81  S...DLKIEThkedel.
dmpp_psepu  81  S...DLVIEAdvda...
memc_metca  84  T...DLEIELpythcr.
rfbi_salty  77  T...ALELNAhffpel.
xylz_psepu  85  S...DCVIRVpaasdv.
ascd_yerps  80  S...DIELDVnyypel.
yfae_ecoli  78  G...DIEIEM.......
1guaB       68  G..eELQVDFl......
2pia        83  S..aELVLDL.......
1alo        66  RvadGAQITTiegvgq.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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