1bbt3 - reference 1


Name                 foot-and-mouth disease virus			

Number of sequences              5
Alignment Length                 216
Longest Sequence                 192
Shortest Sequence                149
Average Percent Identity         13
Maximum Percent Identity         23
Minimum Percent Identity         7

Sequence Name    SWISSPROT Accession
1bbt3                P03305         
1aym3                Q82122         
1bbt2                P03305         
1aym1                Q82122         
1bbt1                P03305         

Family   1bbt3 1aym3 1bbt2
Family   1aym1
Family   1bbt1


1bbt3        1  .ft.nlldvaeacptfl......rfeggvpyvtt...ktdsdrvlaqfdm
1aym3        1  .vk.nliemcqvdtlipinstqsnignvsmytvtlspqtklaeeifaikv
1bbt2        1  gletrvvqae.............rffkthlfdwv...tsdsfgrchllel
1aym1        1  ...emsvesflgrs.........gcihesvldiv...dnyndqsftkwni
1bbt1        1  .qhtdvsfim.................drfvkv.....tpqnqinildlm

1bbt3       40  slaakhmsntfLAGLAQYYTQYSGTINLHFmftgpt....dakarymVAY
1aym3       49  diashplattlIGEIASYFTHWTGSLRFSFmfcgta....nttlkvlLAY
1bbt2       35  ptdhk....gvYGSLTDSYAYMRNGWDVEVtavgnq....fnggcllVAM
1aym1       36  nlqem....aqIRRKFEMFTYARFDSEITMvpsvaakdghighivmqYMY
1bbt1       28  qvpsh....tlVGGLLRASTYYFSDLEIAVkhe............gdLTW

1bbt3       86  APPGMEpp..ktpeaaah..cihaewdtglnSKFTFSIPYLSAADYtyta
1aym3       95  TPPGIGkp..rsrkeaml..gthvvwdvglqSTVSLVVPWISASQYrftt
1bbt2       77  VPELCSiq.krelyqltl..fphqfinprtnMTAHITVPFVGVNRYdqyk
1aym1       82  VPPGAPipttrddyawqsgtnasvfwqhg.qPFPRFSLPFLSIASAyymf
1bbt1       62  VPNGAP......ekaldnttnptayhk...aPLTRLALPYTAPHRVlatv

1bbt3      132  s..........dvaettnvqgwvclfqithg......kadgdalvvlasa
1aym3      141  p............dtyssagyitcwyqtnfvv..ppntpntaemlcfvsg
1bbt2      124  v.................hkpwtlvvmvvapltvntegapqikvyaniap
1aym1      131  ydgydgdtyksrygtvvtndmgtlcsrivt....seqlhkvkvvtriyhk
1bbt1      103  yngec....xxxrtlptsfnygaikat...............rvtellyr

1bbt3      166  gkdfelrlpvdarae.
1aym3      177  ckdfclrmardtdlhk
1bbt2      157  t.nvhvagefpske..
1aym1      177  akhtkawcprppravq
1bbt1      134  mkraetycprpllaih

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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