1mfa - reference 4


Name                 immunoglobulin fab fragment

Number of sequences              7
Alignment Length                 486
Longest Sequence                 468
Shortest Sequence                117
Average Percent Identity         18
Maximum Percent Identity         46
Minimum Percent Identity         6

Sequence Name    SWISSPROT Accession
1mfa                 P01726         
1fgvH                P01765         
1bec                 P04213         
1tcrA                P01738         
1kb5B                P04214         
CD4_HUMAN            P01730         
IL6A_HUMAN           P08887         

Family   1mfa 1fgvH 1bec 1tcrA 1kb5B CD4_HUMAN IL6A_HUMAN


1mfa         1  .........wifgggtkltvlgqgevqvqqsg.tvvarpga.sVKMSCka
1fgvH        1  ........................evqlvesg.gglvqpgg.sLRLSCat
1bec         1  ..........................avtqsprnkvavtgg.kVTLSCqq
1tcrA        1  .........................qsvtq.pdarvtvsegasLQLRCky
1kb5B        1  ........................vtlleq.nprwrlvprgqaVNLRCil
CD4_HUMAN    1  .......mnrgvpfrhlllvlqlallpaatqgkkvvlgkkgdtVELTCta
IL6A_HUMAN   1  mlavgcallaallaapgaalaprrcpaqevargvltslpgd.sVTLTCpg

1mfa        40  sgytftnywmhwikqrpgqglewigaiypgnsatfynhkfraktkltavt
1fgvH       25  sgytfteytmhwmrqapgkglewvaginpknggtsyadsvkgrftisvdk
1bec        24  tnn...hnnmywyrqdtghglrlihysygags.tekgd.ipdgykasrps
1tcrA       25  sysa..tpylfwyvqyprqglqlllkyy.sgd.pvvq..gvngfeaefsk
1kb5B       26  knsq..ypwmswyqqdlqkqlqwlftlrspgdkevksl.pgadylatrvt
CD4_HUMAN   44  sqkk..siqfhwkn...snqikilgnqgsfltkgpsk..lndradsrrsl
IL6A_HUMAN  50  veped.natvhwvlrkpaagshpsrwagmgrrlllrsvqlhdsgnyscyr

1mfa        90  stttaymelsslts.edsavyyctrg..ghgyyg.....dywGQGASLTV
1fgvH       75  skntlylqmnslra.edtavyycarwrgldvryf.....dvwGQGTLVTV
1bec        69  ..qeqfslilelatpsqtsvyfcasg.ggrgsya....eqffGPGTRLTV
1tcrA       69  s.nssfhlrkasvhwsdsavyfcavs....gfas....altfGSGTKVIV
1kb5B       73  ..dtelrlqvanms..qgrtlyctcs.aapdwgasae.tlyfGSGTRLTV
CD4_HUMAN   87  wdqgnfpliiknlkiedsdtyiceve..............dqKEEVQLLV
IL6A_HUMAN  99  agrpagtvhllvdvppeepqlscfrksplsnvvcewgprstpSLTTKAVL

1mfa       132  s.................................................
1fgvH      119  ss................................................
1bec       112  ledlrqvtppkvslfepskaeiankqkatlvclargffpdhvelswwvng
1tcrA      110  lpyiqnpepavyalkdprsqdstlclftdfdsqinvpktmesgtfitdat
1kb5B      117  l.................................................
CD4_HUMAN  123  fgltansdthllqgqsltltlesppgsspsvqcrsprgkniqggktlsvs
IL6A_HUMAN 149  lvrkfqnspaedfqepcqysqesqkfscqlavpegdssfyivsmcvassv

1mfa       133  ..................................................
1fgvH      121  ..................................................
1bec       162  kevhsgvstdpqaykesnysyclssrlrvsatfwhnprnhfrcqvqfhgl
1tcrA      160  vldmkamdsksngaiawsnqtsftcqdifketnatypssdvpc.......
1kb5B      118  ..................................................
CD4_HUMAN  173  qlelqdsgtwtctvlqnqkkvefkidivvlafqkassivykkegeqvefs
IL6A_HUMAN 199  gskfsktqtfqgcgilqpdppanitvtavarnprwlsvtwqdphswnssf

1mfa       133  ..................................................
1fgvH      121  ..................................................
1bec       212  seedkwpegspkpvtqnisaeawgrad.......................
1tcrA      203  ..................................................
1kb5B      118  ..................................................
CD4_HUMAN  223  fplaftvekltgsgelwwqaerassskswitfdlknkevsvkrvtqdpkl
IL6A_HUMAN 249  yrlrfelryraersktfttwmvkdlqhhcvihdawsglrhvvqlraqeef

1mfa       133  ..................................................
1fgvH      121  ..................................................
1bec       239  ..................................................
1tcrA      203  ..................................................
1kb5B      118  ..................................................
CD4_HUMAN  273  qmgkklplhltlpqalpqyagsgnltlaleaktgklhqevnlvvmratql
IL6A_HUMAN 299  gqgewsewspeamgtpwtesrsppaenevstpmqalttnkdddnilfrds

1mfa       133  ..................................................
1fgvH      121  ..................................................
1bec       239  ..................................................
1tcrA      203  ..................................................
1kb5B      118  ..................................................
CD4_HUMAN  323  qknltcevwgptspklmlslklenkeakvskrekavwvlnpeagmwqcll
IL6A_HUMAN 349  anatslpvqdsssvplptflvaggslafgtllciaivlrfkktwklralk

1mfa       133  ..................................................
1fgvH      121  ..................................................
1bec       239  ..................................................
1tcrA      203  ..................................................
1kb5B      118  ..................................................
CD4_HUMAN  373  sdsgqvllesnikvlptwstpvqpmalivlggvaglllfiglgiffcvrc
IL6A_HUMAN 399  egktsmhppyslgqlvperprptpvlvplisppvspsslgsdntsshnrp

1mfa       133  ....................................
1fgvH      121  ....................................
1bec       239  ....................................
1tcrA      203  ....................................
1kb5B      118  ....................................
CD4_HUMAN  423  rhrrrqaermsqikrllsekktcqcphrfqktcspi
IL6A_HUMAN 449  dardprspydisntdyffpr................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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