1cpt - reference 1


Name                 cytochrome p450								

Number of sequences              4
Alignment Length                 461
Longest Sequence                 434
Shortest Sequence                378
Average Percent Identity         20
Maximum Percent Identity         26
Minimum Percent Identity         14

Sequence Name    SWISSPROT Accession
1cpt                 P33006         
1oxa                 Q00441         
1phd                 P00183         
2hpdA                P14779         

Family   1cpt 1oxa 1phd
Family   2hpdA


1cpt         1  eviypAFKWLRDEQ..pLAMAHIEGydpmwiatkhadvmqigkqpglfsn
1oxa         1  .dwysTYAELRETA..pVTPVRFLG.qdawlvtgydeakaalsdlr.lss
1phd         1  .gvqeAWAVLQESNvpdLVWTRCNG..ghwiatrgqlireayedyrhfss
2hpdA        1  .kpvqALMKIADEL.geIFKFEAPGrvtrylss.qrlikeacdesr.fdk

1cpt        49  ae.....gseilyd..qnneafmrsisggcphvidsltsmDPPTHTAYRG
1oxa        46  dpkkkypgvevefpaylgfpedvrnyfat.....nmgts.DPPTHTRLRK
1phd        48  ecp..............fipreageaydfi......ptsmDPPEQRQFRA
2hpdA       47  n..............lsqalkfvrdfagdgl....ftswtHEKNWKKAHN

1cpt        92  LTLNWFQPASIRKLEENIRRIAQASVQRLldfd..gecdfmtdcalyypl
1oxa        90  LVSQEFTVRRVEAMRPRVEQITAELLDEVgdsg...vvdivdrfahplpi
1phd        78  LANQVVGMPVVDKLENRIQELACSLIESLrpq...gqcnftedyaepfpi
2hpdA       79  ILLPSFSQQAMKGYHAMMVDIAVQLVQKWerlnadehievpedmtr..lt

1cpt       140  hvVMTALGVp..........eddeplmlklt.qdffg............v
1oxa       137  kvICELLGVd..........eaargafgrwsseilvmd...........p
1phd       125  riFMLLAGLp..........eediphlkylt.dqmtr............p
2hpdA      127  ldTIGLCGFnyrfnsfyrdqphpfitsmvraldeamnklqranpddpayd

1cpt       167  eaarrfhETIATFYDYFNGFTVDRRSCP..kdDVMSLLANSKld..gnyI
1oxa       166  eraeqrgQAAREVVNFILDLVERRRTEP..gdDLLSALISVQddddgr.L
1phd       152  dgsmtfaEAKEALYDYLIPIIEQRRQKP..gtDAISIVANGQvn..grpI
2hpdA      177  enkrqfqEDIKVMNDLVDKIIADRKASGeqsdDLLTHMLNGKdpetgepL

1cpt       213  DDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEqlalaksd......
1oxa       213  SADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDqlalvrad......
1phd       198  TSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEhrqelier......
2hpdA      227  DDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHvlqkaaeeaarvlv

1cpt       257  ...........palIPRLVDEAVRWTAPVKSFMRTALADTEVRG.qnIKR
1oxa       257  ...........psaLPNAVEEILRYIAPPETTTRFAAEEVEIGG.vaIPQ
1phd       242  ...........perIPAACEELLRRFSLV.ADGRILTSDYEFHG.vqLKK
2hpdA      277  dpvpsykqvkqlkyVGMVLNEALRLWPTAPAFSLYAKEDTVLGGeypLEK

1cpt       295  GDRIMLSYPSANRDeevf.snpdefditrfp.......nrhlgFGWGAHM
1oxa       295  YSTVLVANGAANRDpsqf.pdphrfdvtrdt.......rghlsFGQGIHF
1phd       279  GDQILLPQMLSGLDeren.acpmhvdfsrqk.......vshttFGHGSHL
2hpdA      327  GDELMVLIPQLHRDktiwgddveefrperfenpsaipqhafkpFGNGQRA

1cpt       337  CLGQHLAKLEMKIFFEELLPKLksvels.gpprlvat..nfvggpknvpi
1oxa       337  CMGRPLAKLEGEVALRALFGRFpalslgidaddvvwrrslllrgidhlpv
1phd       321  CLGQHLARREIIVTLKEWLTRIpdfsia.pgaqiqhksg.ivsgvqalpl
2hpdA      377  CIGQQFALHEATLVLGMMLKHFdfedht..nyeldiket.ltlkpegfvv

1cpt       384  rftka......
1oxa       387  rldg.......
1phd       369  vwdpattkav.
2hpdA      424  kakskkiplgg

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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