1idy - reference 2


Name                 dna binding										

Number of sequences              22
Alignment Length                 63
Longest Sequence                 60
Shortest Sequence                49
Average Percent Identity         28
Maximum Percent Identity         60
Minimum Percent Identity         4

Sequence Name    SWISSPROT Accession
1hstA                P02259         
h1d_strpu            P15870         
h1b_strpu            P15869         
h1_tigca             P35060         
h1l_myttr            Q05831         
h1_echcr             P02257         
h11_caeel            P10771         
h1a_pladu            P06894         
h1_dicdi             P54671         
h1_wheat             P27806         
h12_caeel            P15796         
h1l_yeast            P53551         
h1_pea               P08283         
h11_glysa            P40266         
h1b_xenla            P06893         
b4_xenla             P15308         
h11_volca            Q08864         
h1_lycpn             P40267         
1tc3C                P34257         
1aoy                 P15282         
1idy                 P06876         
1jhgA                P03032         

Family   1hstA h1d_strpu h1b_strpu h1_tigca h1l_myttr h1_echcr h11_caeel h1a_pladu h1_dicdi h1_wheat h12_caeel h1l_yeast h1_pea h11_glysa h1b_xenla b4_xenla h11_volca h1_lycpn
Family   1tc3C
Family   1aoy
Family   1idy
Family   1jhgA


1hstA        1  ...shptysEMIAAAIRAEKsrggssrqsIQKYIkshykvg...hnadlq
h1d_strpu    1  ...shpkysDMIASALESLKekkgssrqaILKYVkanftvgd...nanvh
h1b_strpu    1  ...ahpsssEMVLAAITALKerggssaqaIRKYIeknytvdi..kkqaif
h1_tigca     1  ...thpptsVMVMAAIKALKerngsslpaIKKYIaanykvdv..vknahf
h1l_myttr    1  ....kpstlSMIVAAITAMKnrkgssvqaIRKYIlannkgin.tshlgsa
h1_echcr     1  ...ahppviDMITAAIAAQKerrgssvakIQSYIaakyrcdi..nalnph
h11_caeel    1  ...ahppyiNTIKEAIKQLKdrkgaskqaILKFIsqnyklgd....nviq
h1a_pladu    1  ...ahppvaTMVVTAILGLKerkgssmvaIKKYIaanyrvdv......ar
h1_dicdi     1  ...nhptyqVMISTAIAHYKdrtgssqpaIIKYIeanynvap..dtfktq
h1_wheat     1  ...ahpsyaEMVSEAIAALKersgsstiaIGKFIedkheahl.panfrki
h12_caeel    1  ...ahppfiNMIKEAIKQLKerkgsskiaILKYItanykvgdqltrinsr
h1l_yeast    1  ...ssksyrELIIEGLTALKerkgssrpaLKKFIkenypivgsasnfdly
h1_pea       1  ...shptyeEMIKDAIVSLKekngssqyaIAKFIeekqkqlp..anfkkl
h11_glysa    1  ...thppvsEMVVNALKTLNekggssviaIKKFLvatykvei..ekllpf
h1b_xenla    1  ...sgpsasELIVKAVSSSKersgvslaaLKKALaaggydvd...knnsr
b4_xenla     1  ...shpptlSMVVEVLKKNTerkgtsvqaIRTRIlsahptvd.....plr
h11_volca    1  ...thppyiEMVKDAITTLKerngsslpaLKKFIenkygkdi....hdkn
h1_lycpn     1  ...thppyfQMIKEALLALNekggsspyaVAKYMedkhkdel.panfrki
1tc3C        1  rgsalsdteRAQLDVMKLLN....vslheMSRKIs..........rsrhc
1aoy         1  .mrssakqeELVKAFKALLKeekfssqgeIVAALqeq.gfd...ninqsk
1idy         1  mevkktswtEEEDRILYQAHkrlgnrwaeIAKLLp.........grtdna
1jhgA        1  tpderealgTRVRIIEELLRge..msqreLKNELg..........agiat

1hstA       45  IKLSIRRLLaagv
h1d_strpu   45  IKQALKRGVtsgq
h1b_strpu   46  IKRALITGVekgt
h1_tigca    46  IKKALKSLVekkk
h1l_myttr   46  MKLAFAKGLksgv
h1_echcr    46  IRRALKNQVksga
h11_caeel   44  INAHHRQALkrgv
h1a_pladu   42  LAPFIRKFIrka.
h1_dicdi    46  LKLALKRLVakgt
h1_wheat    47  LLTQIKKLVaagk
h12_caeel   48  LRAALNKGVaska
h1l_yeast   48  FNNAIKKGVeagd
h1_pea      46  LLQNLKKNVasgk
h11_glysa   46  IKKFLKGAVlkge
h1b_xenla   45  LKLALKALVtkgt
b4_xenla    43  LKFLLRTALnkgl
h11_volca   44  FAKTLSQVVktf.
h1_lycpn    47  LGLQLKNSAakgk
1tc3C       37  IRVYLKDPVsygt
1aoy        46  VSRMLTKFGavrt
1idy        42  IKNHWNSTMrrkv
1jhgA       39  ITRGSNSLKaapv

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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