1aym3 - reference 1


Name                 rhinovirus 16 coat protein					

Number of sequences              4
Alignment Length                 248
Longest Sequence                 244
Shortest Sequence                219
Average Percent Identity         32
Maximum Percent Identity         42
Minimum Percent Identity         26

Sequence Name    SWISSPROT Accession
1mec3                P12296         
1fmd3                P15072         
1r1a3                P23008         
POLG_HE71M           Q66479         

Family   1mec3 1fmd3 1r1a3 POLG_HE71M


1mec3        1  sPIPVTIREHAGTWYSTLP...dstVPIYGktpvapanyMVGEYKDFLEI
1fmd3        1  gIFPVACSDGYGNMVTTDP...ktaDPAYGkvynpprtaLPGRFTNYLDV
1r1a3        1  .GLPVYITPGSGQFMTTDDmqspcaLPWYH...ptkeisIPGEVKNLIEM
POLG_HE71M   1  qGFPTELKPGTNQFLTTDDgvsapiLPNFH...ptpcihIPGEVRNLLEL

1mec3       48  AQI.PTFI......gnkmp.navpyieasntavktqplavyqvtlscsc.
1fmd3       48  AEACPTFL.........mf.envpyvstr..tdgqrllakfdvslaakh.
1r1a3       47  CQV.DTLIpvnnvgnnvgn.vsmytvqlgnqtgmaqkvfsikvditstp.
POLG_HE71M  48  CQV.ETILevnnvptnatslmerlrfpvsaqagkgelcavfradpgrdgp

1mec3       89  laNTFLAALSRNFAQYRGSLVYTFVFTGTAMMKGKFLIAYTPPGAGKPTS
1fmd3       85  msNTYLAGLAQYYTQYTGTINLHFMFTGPTDAKARYMVAYVPPGMDAPDN
1r1a3       94  laTTLIGEIASYYTHWTGSLRFSFMFCGTANTTLKLLLAYTPPGIDEPTT
POLG_HE71M  97  wqSTMLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKD

1mec3      139  RDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRmvgtdqanitNVDGWVt
1fmd3      135  PEEAAHCIHAEWDTGLNSKFTFSIPYISAADYTytasheaettCVQGWVc
1r1a3      144  RKDAMLGTHVVWDVGLQSTISLVVPWVSASHFRl...tadnkySMAGYIt
POLG_HE71M 147  RATAMLGTHVIWDFGLQSSVTLVIPWISNTHYRahardgvfdyYTTGLVs

1mec3      189  vwqltpltyppgcptsaKILTMVSAGKDFSLKMPISpapwspq.....
1fmd3      185  vyqith.....gkadadALVVSASAGKDFELRLPVDarqq........
1r1a3      191  cwyqtnlvvppstpqtaDMLCFVSACKDFCLRMARDtdlhiqsgpieq
POLG_HE71M 197  iwyqtnyvvpigapntaYILALAAAQKNFTMKLCKDtshilqtasiqg

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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