1ubi - reference 3
Name ubiquitin cysteine
Number of sequences 22
Alignment Length 121
Longest Sequence 97
Shortest Sequence 69
Average Percent Identity 20
Maximum Percent Identity 70
Minimum Percent Identity 5
Sequence Name SWISSPROT Accession
1ubi P02248
ned8_mouse P29595
ubil_caeel Q07372
dsk2_yeast P48510
bat3_human P46379
r23a_human P54725
1guaB P10113
kraa_human P10398
rmil_chick Q04982
kraf_drome P11346
kraf_caeel Q07292
1awd P56408
ferv_anava P46047
fer2_synp6 P08451
dmpp_psesp P19734
memc_metca P22868
rfbi_salty P26395
xylz_psepu P23101
ascd_yerps P37911
2pia P33164
vanb_pses9 P12580
fer_samni P00226
Family 1ubi ned8_mouse ubil_caeel dsk2_yeast bat3_human r23a_human
Family 1guaB kraa_human rmil_chick kraf_drome kraf_caeel
Family 1awd ferv_anava fer2_synp6 dmpp_psesp memc_metca rfbi_salty xylz_psepu ascd_yerps 2pia vanb_pses9 fer_samni
1ubi 1 ......MQIFVkt.ltgktITLEVEPSDTIENVKAKiqdkeg...ippd.
ned8_mouse 1 ......MLIKVkt.ltgkeIEIDIEPTDKVERIKERveekeg...ippq.
ubil_caeel 1 .......MVFVkt.lh.rtLFLEVAANEDVLSIKQKieaaeg...ipae.
dsk2_yeast 1 ......LNIHIks.gqdk.WEVNVAPESTVLQFKEAinkang...ipva.
bat3_human 1 ......LEVLVkt.ldsqtRTFIVGAQMNVKEFKEHirasvs...ipse.
r23a_human 1 ......VTITLkt.lqqqtFKIRMEPDETVKVLKEKieaekgrdafpva.
1guaB 1 ......NTIRVfl.pnkqrTVVNVRNGMSLHDCLMKalkvrg...lqpec
kraa_human 1 ......GTVKVyl.pnkqrTVVTVRDGMSVYDSLDKalkvrg...lnqdc
rmil_chick 1 ......PIVRVfl.pnkqrTVVPARCGVTVRDSLKKalmmrg...lipec
kraf_drome 1 ....pkILLRAhl.pnqqrTSVEVISGVRLCDALMKalklrq...ltpdm
kraf_caeel 1 ......KMIMVhl.pfdqhSRVEVRPGETARDAISKllkkrn...itpql
1awd 1 ......YKVTLkt.psg.eETIECPEDTYILDAAEEa.gld....lpysc
ferv_anava 1 ......YQVRLinkkraidITIPVDENTTILDAAEQq.die....lpfsc
fer2_synp6 1 ......YQVEViy..qgqsQTFTADSDQSVLDSAQAa.gvd....lpasc
dmpp_psesp 1 ......YNVTIe..ptg..EVIEVEDGQTILQAALRq.gvw....lpfac
memc_metca 1 ......HTITAvt.edgesLRFECRSDEDVITAALRq.nif....lmssc
rfbi_salty 1 ....msHIIKIf..psn..IEFSGREDESILDAALSa.gih....lehsc
xylz_psepu 1 ......HKVATdf.edgvtRFIDANTGETVADAAYRq.gin....lpldc
ascd_yerps 1 ......LNVKLh..psg..IIFTSDGTSTILDAALDs.nih....ieysc
2pia 1 arentpFTVRLs..rsg..TSFEIPANRSILEVLRDa.nvr....vpssc
vanb_pses9 1 ....raFEGRLa..rsg..LTLQVPAERSVAQVLDDa.gvc....iplac
fer_samni 1 ......YKVKLit.pdg.pQEFECPDDVYILEHAEEl.gid....ipysc
1ubi 40 .......QQRLIFa.......................GKQLedgr..tLS
ned8_mouse 40 .......QQRLIYs.......................GKQMndek..tAA
ubil_caeel 38 .......EQRLCYa.......................GRQLed......S
dsk2_yeast 39 .......NQRLIYs.......................GKILkddq..tVE
bat3_human 40 .......KQRLIYq.......................GRVLqddk..kLQ
r23a_human 43 .......GQKLIYa.......................GKILsddv..pIR
1guaB 41 .......CAVFRLlheh...................kGKKArldwntdAA
kraa_human 41 .......CVVYRLi......................kGRKTvtawdtaIA
rmil_chick 41 .......CAVYRIq......................dGEKKpigwdtdIS
kraf_drome 43 .......CEVSTTh......................sGRHIip.whtdIG
kraf_caeel 41 .......CHVNASsdpkq..................eSIELsltmeeiAS
1awd 38 ragacssCAGKVEsgevdqsdqs.flddaqmg....kGFVL......tCV
ferv_anava 40 qsgscssCVAKVVegevdqseqv.fldeeqma....kGFIV......lCV
fer2_synp6 38 ltgvcttCAARILsgevdqpdam.gvgpepak....qGYTL......lCV
dmpp_psesp 36 ghgtcatCKVQVVegevdigeaspfalmdierd...eRKVL......aCC
memc_metca 39 reggcatCKALCSegdydlkgcsvqalppeeee...eGLVL......lCR
rfbi_salty 38 kagdcgiCESDLLagevvdskgnifgq.........gDKIL......tCC
xylz_psepu 39 rdgacgaCKCFAEsgryslgee..yiedalseaeaeqGYVL......tCQ
ascd_yerps 36 kdgtcgsCKAILIsgevdsaent.flteedva....kGAIL......tCC
2pia 42 esgtcgsCKTALCsgeadhrdm..vlrdde......kGTQIm.....vCV
vanb_pses9 38 eqgicgtCLTRVLdgepehrds..fltdaera....rNDQFt.....pCC
fer_samni 38 ragscssCAGKLVagsvdqsdqs.flddeqie....eGWVL......tCV
1ubi 58 DYNiqkestLHLVlrlrgg..
ned8_mouse 58 DYKilggsvLHLVlalrg...
ubil_caeel 52 DCGidseatIYVNlellg...
dsk2_yeast 57 SYHiqdghsVHLVks......
bat3_human 58 EYNv.ggkvIHLVer......
r23a_human 61 DYRideknfVVVMvtktka..
1guaB 65 SLI...geeLQVDfl......
kraa_human 62 PLD...geeLIVEv.......
rmil_chick 62 WLT...geeLHVEv.......
kraf_drome 63 TLH...veeIFVRl.......
kraf_caeel 66 RLP...gneLWVH........
1awd 77 AYPt...sdVTILthqeaaly
ferv_anava 79 SYPr...sdCTIRthqepyl.
fer2_synp6 77 AYPr...sdLKIEthkedel.
dmpp_psesp 77 AIPl...sdLVIEadvda...
memc_metca 80 TYPk...tdLEI.........
rfbi_salty 73 CKPk...taLELNahffpel.
xylz_psepu 81 MRAe...sdCVIRvpaasdv.
ascd_yerps 75 SKAk...sdIELDvnyypel.
2pia 79 SRAk..saeLVLDl.......
vanb_pses9 77 SRAr..sacLVLD........
fer_samni 77 AYPk...sdVTI.........
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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