1ajsA - reference 3


Name                 aminotransferase										

Number of sequences              28
Alignment Length                 461
Longest Sequence                 396
Shortest Sequence                340
Average Percent Identity         20
Maximum Percent Identity         68
Minimum Percent Identity         8

Sequence Name    SWISSPROT Accession
1ajsA                P00503         
aat2_arath           P46645         
aatm_human           P00505         
aatc_yeast           P23542         
aatm_lupan           P26563         
aat_haein            P44425         
aat_ecoli            P00509         
tyrb_ecoli           P04693         
phhc_pseae           P43336         
2dkb                 P16932         
gabt_mycle           P40829         
argd_bacsu           P36839         
oat_human            P04181         
oat_bacsu            P38021         
argd_anasp           P54752         
oat_ecoli            P42588         
2gsaA                P24630         
gsa_pseae            P48247         
gsa_metja            Q58020         
gsab_bacsu           P71084         
gsa_helpy            P56115         
gsa_mycle            P46716         
1ax4A                P28796         
tnaa_entae           Q59342         
tna2_symth           P31015         
tnaa_ecoli           P00913         
tpl_erwhe            P31011         
tpl_symth            Q08897         

Family   1ajsA aat2_arath aatm_human aatc_yeast aatm_lupan aat_haein aat_ecoli tyrb_ecoli phhc_pseae
Family   2dkb gabt_mycle argd_bacsu oat_human oat_bacsu argd_anasp oat_ecoli
Family   2gsaA gsa_pseae gsa_metja gsab_bacsu gsa_helpy gsa_mycle
Family   1ax4A tnaa_entae tna2_symth tnaa_ecoli tpl_erwhe tpl_symth


1ajsA        1  ..........WVLPVVRKveqriannsslnheylpilglaefRTCASRLA
aat2_arath   1  .rteeg..kpLVLDVVRKaeqqlvndpsrvkeyipivgisdfNKLSAKLI
aatm_human   1  .rddng..kpYVLPSVRKaeaqiaaknl.dkeylpigglaefCKASAELA
aatc_yeast   1  .rddng..kpWVLPSVKAaeklihndssynheylgitglpslTSNAAKII
aatm_lupan   1  .rteel..qpYVLKVVNKaenlmlergq.nkeylaieglaafNKATAELL
aat_haein    1  .kdaqg..ttPIMHAVKEaekrlfdkek.tknyltidgiadyNEQTKALL
aat_ecoli    1  .kdetg..ktPVLTSVKKaeqyllenet.tknylgidgipefGRCTQELL
tyrb_ecoli   1  .ynedg..iiPQLQAVAEaearlnaqphgaslylpmeglncyRHAIAPLL
phhc_pseae   1  .kdaqg..ltPILRSVKLaeqrlveqet.tksyvgghgdalfAARLAELA
2dkb         1  .savlghchpEIVSVIGEyagkldhl...fseml....srpvVDLATRLA
gabt_mycle   1  .vttignsspRVVDAVRAqvadftht...cfiitp...yeeyVAVTEQLN
argd_bacsu   1  .vsnlghcheAVTEAVKKqldsvwhv...snlfq....nslqEQAAQKLA
oat_human    1  .avnqghchpKIVNALKSqvdkltlt...srafy.....nnvLGEYEEYI
oat_bacsu    1  .avnqghrhpKIIQALKDqadkitlt...srafh.....ndqLGPFYEKT
argd_anasp   1  .tctlghahpAMVEAVTRqiqklhhv...snlyy.....ipeQGELAQWI
oat_ecoli    1  .ifnvghrnpVVVSAVQNqlakqplh...sqell....dplrAMLAKTLA
2gsaA        1  .paicghahpEVIEALKVamek.......gtsfgap...calENVLAEMV
gsa_pseae    1  .pmilghshpDVLDAVRRqldh.......glsygap...talEVEMADLV
gsa_metja    1  .pmvlghandAVIKAVKEqlel.......gsaygcp...tekEIILAKEV
gsab_bacsu   1  .piitghahpHITEAIKKaaen.......gvlygtp...tkhEVTFAKML
gsa_helpy    1  .plifghadeEIEENIINalkk.......gtsfgap...telETTLAKEI
gsa_mycle    1  .pmilghahpAVVDAVATvaas.......glsfgap...tpaETQLAAEI
1ax4A        1  ......amsdHQWAAMITg..........deayags.rnyydLKDKAKEL
tnaa_entae   1  tdsgtgamsdHQWAGLMMg..........deayags.rnyqhLCEKVKEI
tna2_symth   1  tdsgtgamsqFQWSAMMLg..........desyaga.ssyyrLKEAVTDI
tnaa_ecoli   1  tdsgtgavtqSMQAAMMRg..........deaysgs.rsyyaLAESVKNI
tpl_erwhe    1  tdsgtnamsdKQWAGMMIg..........deayags.enfyhLEKTVKEL
tpl_symth    1  tdsgtnamsdRQWGALMMg..........deayaga.rsffrLEEAVREI

1ajsA       41  LGddspalqekrVGGVQSLGGTGALRIGAEFLARwyn...gtnnkdtpVY
aat2_arath  48  LGadspaitesrVTTVQCLSGTGSLRVGAEFLKThyh........qsvIY
aatm_human  47  LGensevlksgrFVTVQTISGTGALRIGASFLQRffk.......fsrdVF
aatc_yeast  48  FGtqsdafqedrVISVQSLSGTGALHISAKFFSKffp........dklVY
aatm_lupan  47  LGadnpaikqqrVATVQGLSGTGSLRLGAALIERyfp........gakVL
aat_haein   47  FGkdseviqsnrARTVQSLGGTGALRIAAEFIKRqtk........aqnVW
aat_ecoli   47  FGkgsalindkrARTAQTPGGTGALRVAADFLAKnts........vkrVW
tyrb_ecoli  48  FGadhpvlkqqrVATIQTLGGSGALKVGADFLKRyfp........esgVW
phhc_pseae  47  LGaaspllleqrADATQTPGGTGALRLAGDFIAHclp........grgIW
2dkb        43  NItpp...gldrALLLST..GAESNEAAIRMAKLvt........gkyeIV
gabt_mycle  44  RItpg..sgekrSVLFNS..GAEAVENSIKVARSyt........rkpaVV
argd_bacsu  43  GHsag.....dlVFFCNS..GGQANEGAYKLARKat........gktkII
oat_human   42  TKlfn....yhkVLPMNT..GVEAGETACKLARKwgytvkgiqkykakIV
oat_bacsu   42  AKltg....kemILPMNT..GAEAVESAVKAARRwayevkgvadnqaeII
argd_anasp  42  IQhs....cadrVFFCNS..GAEANEAAIKLARKyahtv..ldiekpiIL
oat_ecoli   43  ALtpg...klkySFFCNS..GTESVEAALKLAKAyq.....sprgkftFI
2gsaA       40  NDavp...siemVRFVNS..GTEACMAVLRLMRAyt........grdkII
gsa_pseae   40  CSmvp...smemVRMVSS..GTEATMSAIRLARGyt........grdsII
gsa_metja   40  VKrvp...caemVRFVNS..GTEATMSAIRLARGvt........grkkII
gsab_bacsu  40  KEaip...amdkVRFVNS..GTEAVMTTIRVARAyt........grtkII
gsa_helpy   40  IScye...gldkVRLVSS..GTEATMSAIRLARAys........qkddLI
gsa_mycle   40  IGrma...pverIRLVNS..GTEATMSAVRLARGft........grtkII
1ax4A       34  FN.........yDYIIPAHQGRGAENILFPVLLKykqk...egkaknpVF
tnaa_entae  40  IG.........yPYTIPTHQGRGAEQILFPSLIArrk.......sahpVF
tna2_symth  40  TG.........yEYVLPTHQGRGAEKSAFAQLITrpg..........mYV
tnaa_ecoli  40  FG.........yQYTIPTHQGRGAEQIYIPVLIKkreq.ekgldrskmVA
tpl_erwhe   40  FG.........fKHIVPTHQGRGAENLLSQLAIKpgq...........YV
tpl_symth   40  YG.........fKYVVPTHQGRGAEHLISRILIKpgd...........YI

1ajsA       88  VSSPTWENHNGVFTtagfkd...........irsyry..........wdt
aat2_arath  90  IPKPTWGNHPKVFNlagls............veyfry..........ydp
aatm_human  90  LPKPTWGNHTPIFRdagmq............lqgyry..........ydp
aatc_yeast  90  LSKPTWANHMAIFEnqglk............tatypy..........wan
aatm_lupan  89  ISAPTWGNHKNIFNdarvp............wseyry..........ydp
aat_haein   89  ISTPTWPNHNAIFNavgmt............ireyry..........yda
aat_ecoli   89  VSNPSWPNHKSVFNsagle............vreyay..........yda
tyrb_ecoli  90  VSDPTWENHVAIFAgagfe............vstypw..........yde
phhc_pseae  89  LSDPTWPIHETLFAaaglk............vshypy..........vsa
2dkb        80  GFAQSWHGMTGAAAsatysag..rkgvgpaavgsfaipapftyr.prfer
gabt_mycle  82  AFDHAYHGRTNLTMaltaksmpyksgfgpfapeiyraplsypyrdgllnk
argd_bacsu  78  TFLQSFHGRTYAGMaatgqdk.iktgfgpmlggfhyl.............
oat_human   86  FAAGNFWGRTLSAIssstdpt.sydgfgpfmpgfdii.............
oat_bacsu   86  ACVGNFHGRTMLAVslsseee.ykrgfgpmlpgikli.............
argd_anasp  84  TANASFHGRTLATItatgqak.yqkyfdplvpgfhyv.............
oat_ecoli   83  ATSGAFHGKSLGALsatakst.frkpfmpllpgfrhv.............
2gsaA       77  KFEGCYHGHADMFLvk........agsgvatlglpsspgvp.kkttantl
gsa_pseae   77  KFEGCYHGHSDSLLvk........agsgsltfgvpnspgvp.aafakhtl
gsa_metja   77  KFDGAYHGAHDYVLvk........sgsgalthghpnspgip.eettknti
gsab_bacsu  77  KFAGCYHGHSDLVLva........agsgpstlgtpdsagvp.ksianevi
gsa_helpy   77  KFEGCYHGHSDSLLvk........agsgcatfgspsslgvp.ndfskhtl
gsa_mycle   77  KFSGCYHGHVDALLad........agsgvatlslpsspgvt.gaaaadti
1ax4A       72  ISNFHFDTTAAHVEln................gckainivt.ekafdset
tnaa_entae  74  ISNFHFDTTAAHVEln................gakainvvt.pkafdtts
tna2_symth  71  LSNMFFDTTRGHVQla................g.rpidlll.dv..ptee
tnaa_ecoli  80  FSNYFFDTTQGHSQin................gctvrnvyi.keafdtgv
tpl_erwhe   70  AGNMYFTTTRFHQEkn................gatfvdivr.deahdasl
tpl_symth   70  PGNMYFTTTRTHQElq................ggtfvdvii.deahdpqa

1ajsA      117  ekrgl...DLQGFLSDLenap..efSIFVLh.acahnpTGTDPTPEQW.K
aat2_arath 118  atrgl...DFKGLLEDLgaap..sgAIVLLh.acahnpTGVDPTSEQW.E
aatm_human 118  ktcgf...DFTGAVEDIskip..eqSVLLLh.acahnpTGVDPRPEQW.K
aatc_yeast 118  etksl...DLNGFLNAIqkap..egSIFVLh.scahnpTGLDPTSEQW.V
aatm_lupan 117  ktvgl...DFEGMIEDIkaap..egTFVLLh.gcahnpTGIDPTPEQW.E
aat_haein  117  erkal...DWEHLLEDLsqas..egDVVLLh.gcchnpTGIDPTPEQW.Q
aat_ecoli  117  enhtl...DFDALINSLneaq..agDVVLFh.gcchnpTGIDPTLEQW.Q
tyrb_ecoli 118  atngv...RFNDLLATLktlp..arSIVLLh.pcchnpTGADLTNDQW.D
phhc_pseae 117  d.nrl...DVEAMLAGLerip..qgDVVLLh.acchnpTGFDLSHDDW.R
2dkb       127  ngaydylaELDYAFDLIdrqs..sgNLAAFiaepilssGGIIELPDGYMA
gabt_mycle 132  dlatdgklAGARAINVIekqv.gadDLAAViiepiqgeGGFIVPAEGFLA
argd_bacsu 114  ..pyn...DPSAFKALGee.....gDIAAVmletvqgeGGVNPASAEFLS
oat_human  122  ..pyn...DLPALERALqd.....pNVAAFmvepiqgeAGVVVPDPGYLM
oat_bacsu  122  ..pyg...DVEALRQAIt......pNTAAFlfepiqgeAGIVIPPEGFLQ
argd_anasp 120  ..nyn...DISAVEAAIseldegdyRVAAIlieplqgeGGVRPGDVEYFQ
oat_ecoli  119  ..pfg...NIEAMRTALneckktgdDVAAVilepiqgeGGVILPPPGYLT
2gsaA      118  ttpyn...DLEAVKALFaenp...gEIAGVilepivgnSGFIVPDAGFLE
gsa_pseae  118  tlpfn...DIEAVRKTLgevg...kEVACIivepvagnMNCVPPAPGFLE
gsa_metja  118  lipfn...DEDAVKKAInenk...dEIACIivepimgnVGCILPKEGYLE
gsab_bacsu 118  tvpfn...DIDSYKAALekwg...sEIAAVlvepivgnFGIVEPKEGFLE
gsa_helpy  118  varyn...DLNSTEECFkk.....gNVGCViiepiagnMGLVPAQKEFLL
gsa_mycle  118  vlpyn...DIEAVRQTFarlg...dQIAAViteaspgnMGVVPPAPGYNA
1ax4A      105  yddwkgdfDIKKLKENIaqhg..adNIVAIvstvtcnsAGGQPVSMSNLK
tnaa_entae 107  wydwkgnfDIDLLKATIaehg..aeNVAAIittvtcnsSGGQPVSLANMR
tna2_symth 101  yhpfkgnmDTARLEAFIqehg..aeNIACIvmtvtnnsAGGQPVSMANIR
tnaa_ecoli 113  rydfkgnfDLEGLERGIeevg..pnNVPYIvatitsnsAGGQPVSLANLK
tpl_erwhe  103  nlpfkgdiDLNKLATLIkekg..aeNIAYIclavtvnlAGGQPVSMANMR
tpl_symth  103  shpfkgnvDIAKFEALIdrvg..rdKIPYInvaltvnmAGGQPVSMANLR

1ajsA      160  QIASVMKRRFLFPFFDSAyqgfasg....nlekda.wairyfvsegf...
aat2_arath 161  QIRQLMRSKSLLPFFDSAyqgfasg....sldtda.qsvrtfvadgg...
aatm_human 161  EIATVVKKRNLFAFFDMAyqgfasg....dgdkda.wavrhfieqgi...
aatc_yeast 161  QIVDAIASKNHIALFDTAyqgfatg....dldkda.yavrlgveklstvs
aatm_lupan 160  KIADVIQEKNHIPFFDVAyqgfasg....sldeda.asvrlfvargl...
aat_haein  160  ELAALSAKNGWLPLFDFAyqglang.....ldeda.yglrafaanhk...
aat_ecoli  160  TLAQLSVEKGWLPLFDFAyqgfarg.....leeda.eglrafaamhk...
tyrb_ecoli 161  AVIEILKARELIPFLDIAyqgfgag.....meeda.yairaiasagl...
phhc_pseae 159  RVLDVVRRRELLPLIDFAyqgfgdg.....leeda.wavrlfagelp...
2dkb       175  ALKRKCEARGMLLILDEAqtgvgrtgtmfacqrdgvtp............
gabt_mycle 181  TLLDWCRKNNVMFIADEVqtgfartgamfacehdgivp............
argd_bacsu 154  AVQSFCKEKQALLIIDEIqtgigrtgkgfayehfglsp............
oat_human  162  GVRELCTRHQVLFIADEIqtglartgrwlavdyenvrp............
oat_bacsu  161  EAAAICKEENVLFIADEIqtglgrtgktfacdwdgivp............
argd_anasp 165  KLRQICDDTGILLMFDEVqvgmgrsgklwgyeylgvep............
oat_ecoli  164  AVRKLCDEFGALMILDEVqtgmgrtgkmfacehenvqp............
2gsaA      162  GLREITLEHDALLVFDEVmtgfria.yggvqekfgvtp............
gsa_pseae  162  GLREACDEHGVVLIFDEVmtgfrva.lggaqayygvtp............
gsa_metja  162  FLREITEENDILLIFDEVitgfrla.kggaqeyfgvvp............
gsab_bacsu 162  QVNELTHNAGALVIYDEVitafrfm.yggaqdllqvkp............
gsa_helpy  160  GLKALCEKYQAVLILDEVmsgfras.lsgsqefygvvp............
gsa_mycle  162  ALRAITAEHGALLIIDEVmtgfrvs.rsgwygldpvaa............
1ax4A      153  EVYEIAKQHGIFVVMDSArfcenayfikardpkyknatikevifdmykya
tnaa_entae 155  EVYQIARQNNIPVVIDSArfcenawfikqreegyadksvkeiilemyqyg
tna2_symth 149  ETSRIARKYGILLLFDVAryaenchfirmreegyadkapidiaremfsyg
tnaa_ecoli 161  AMYSIAKKYDIPVVMDSArfaenayfikqreaeykdwtieqitretykya
tpl_erwhe  151  AVHEMASTYGIKIFYDATrcvenayfikeqeagyenvsikdivhemfsya
tpl_symth  151  EVRKVCDRHGIRMWSDATravenayfikereegyqdkpvreilkemmsyf

1ajsA      202  ELFCAqsfsKNFGlynerVGNLTVvak....epDSILRVlsqm.qkivrv
aat2_arath 203  ECLIAqsytKNMGlygerVGALSIvck....saDVASKVesqv.klvvrp
aatm_human 203  NVCLCqsyaKNMGlygerVGAFTMvck....daDEAKRVesql.kilirp
aatc_yeast 206  PVFVCqsfaKNAGmygerVGCFHLaltkqaqnkTIKPAVtsql.akiirs
aatm_lupan 202  EVLVAqsysKNLGlyaerIGAINViss....spESAARVksql.kriarp
aat_haein  201  ELLVAssfsKNFGlynerVGAFTLvae....naEIASTSltqv.ksiirt
aat_ecoli  201  ELIVAssysKNFGlynerVGACTLvaa....dsETVDRAfsqm.kaaira
tyrb_ecoli 202  PALVSnsfsKIFSlygerVGGLSVmce....daEAAGRVlgql.katvrr
phhc_pseae 200  EVLVTsscsKNFGlyrdrVGALIVcaq....naEKLTDLrsql.aflarn
2dkb       213  DILTLs...KTLGag...LPLAAIvts.....aAIEERAhel..gylfyt
gabt_mycle 219  DLICTa...KGIAdg...LPLAAVtgr.....aEIMNAPh....vsglgg
argd_bacsu 192  DIITVa...KGLGng...FPVGAVigk.....kQLGEAFt....pgshgt
oat_human  200  DIVLLg...KALSgg..lYPVSAVlcd.....dDIMLTIk....pgehgs
oat_bacsu  199  DMYILg...KALGgg..vFPISCIaad.....rEILGVFn....pgshgs
argd_anasp 203  DIFTSa...KGLGgg...IPIGAMms......kKFCDVFq....pgehas
oat_ecoli  202  DILCLa...KALGgg..vMPIGATiat.....eEVFSVLfdn..pflhtt
2gsaA      199  DLTTLg...KIIGgg...LPVGAYggk.....rEIMQLVapag.pmyqag
gsa_pseae  199  DLSTFg...KIIGgg...MPVGAFggk.....rEIMQQIsplg.pvyqag
gsa_metja  199  DIATLg...KILGgg...FPIGAIvgr.....rELMEQFsplg.aiyqag
gsab_bacsu 199  DLTALg...KIIGgg...LPIGAYggk.....qEIMEQVaplg.payqag
gsa_helpy  197  DLVTFg...KVIGag...LPLACFggr.....aEIMDLLspig.svyqag
gsa_mycle  199  DLFIFg...KVMSgg...MPAAAFggr.....aEVMERLaplg.pvyqag
1ax4A      203  DALTMsa..KXDPlln.iGGLVAIr.....dneEIFTLArqrcvpmegfv
tnaa_entae 205  DMLTMsa..KKDPmvn.iGGLCCFr.....ddeELFNEVrircvpmegfv
tna2_symth 199  DGLMMsa..KKDAlvn.iGGLLAFk......deELYTRVggtvvpfegfl
tnaa_ecoli 211  DMLAMsa..KKDAmvp.mGGLLCMk...ddsffDVYTECrtlcvvqegfp
tpl_erwhe  201  DGCTMsg..KKDClvn.iGGFLCMn......deEMFSAAkelvvvyegmp
tpl_symth  201  DGCTMsg..KKDClvn.iGGFLAMn......eeWILQKAreqvvifegmp

1ajsA      247  tWSNPPAQGARIVARTLSDPElfhewtgnvktmadrilsmrselrarlea
aat2_arath 248  mYSSPPIHGASIVATILKSSDmynnwtielkemadriksmrqqlfeaiqa
aatm_human 248  mYSNPPLNGARIAAAILNTPDlrkqwlqevkgmadriigmrtqlvsnlkk
aatc_yeast 255  eVSNPPAYGAKIVAKLLETPElteqwhkdmvtmssritkmrhalrdhlvk
aatm_lupan 247  mYSNPPVHGARIVADIVGNPAlfdewkvememmagriknvrqqlydsiss
aat_haein  246  lYSNPASHGGATVATVLNDAQlrqeweneltemrerikkmrhlfvqllke
aat_ecoli  246  nYSNPPAHGASVVATILSNDAlraiweqeltdmrqriqrmrqlfvntlqe
tyrb_ecoli 247  nYSSPPNFGAQVVAAVLNDEAlkaswlaeveemrtrilamrqelvkvlst
phhc_pseae 245  lWSTPPAHGAEVVAAILGDSElkglwqeevegmrsriaslriglvealap
2dkb       250  tHVSDPLPAAVGLRVLDVVQRd...glvaranvmgdrlrrglldlmer..
gabt_mycle 254  tFGGNPVACAAALATITTIENd...gliqraqqierlitdrllrlqda..
argd_bacsu 227  tFGGNMLAMAAVNATLQIVFQp...dflqeaadkgaflkeqleaelks..
oat_human  236  tYGGNPLGCRVAIAALEVLEEe...nlaenadklgiilrnelmklps...
oat_bacsu  235  tFGGNPLACAVSIASLEVLEDe...kladrslelgeyfkselesids...
argd_anasp 237  tFGGNPFACGVALAVCQTLERe...nilqnvqdrgeqlrsglraiaak..
oat_ecoli  240  tFGGNPLACAAALATINVLLEq...nlpaqaeqkgdmlldgfrqlare..
2gsaA      237  tLSGNPLAMTAGIKTLELLRQp...gtyeyldqitkrlsdgllaiaqe..
gsa_pseae  237  tLSGNPLAMAAGLTTLRLISRp...gfhdeltayttrmldglqqrada..
gsa_metja  237  tFNGNPISITAGIATLKQLDDr....fyketartakiladtlreladk..
gsab_bacsu 237  tMAGNPASILSGIACLEVLKEk...gvyekldhlgamleegimkhaet..
gsa_helpy  235  tLSGNPLAVCAGLSALYKIKRdk..tlytrldalairltqglqksaqn..
gsa_mycle  237  tLSGNPVAMAAGLATLRAAAD....avyatldrnadrlvamlsealtd..
1ax4A      245  tYGG..LAGRDMAAMVQGLEE....gteeeylhyrigqvkylgdrlre..
tnaa_entae 247  tYGG..LAGRDMEALAIGLEE....gtnedylayrinqveylgerlre..
tna2_symth 240  tYGG..LAGRDLEAMAVGLRE....aldpdylayrvgqveylgnllrs..
tnaa_ecoli 255  tYGG..LEGGAMERLAVGLYD....gmnldwlayriaqvqylvdglee..
tpl_erwhe  242  sYGG..LAGRDMEAMAIGLRE....amqyeyiehrvkqvrylgdklre..
tpl_symth  242  tYGG..LAGRDMEAIAQGIYE....mvdddyiahrihqvrylgeqlle..

1ajsA      297  .lktpgtwnhitdqiGMFSFTGln.................pkqVEYLIN
aat2_arath 298  .rgtpgdwshiikqiGMFTFTGln.................keqVEFMTK
aatm_human 298  .egsthnwqhitdqiGMFCFTGlk.................peqVERLIK
aatc_yeast 305  .lgtpgnwdhivnqcGMFSFTGlt.................pqmVKRLEE
aatm_lupan 297  kdksgkdwsfilkqiGMFSYTGln.................knqSDNMTN
aat_haein  296  .ygaeqdfsfiieqnGMFSFSGlt.................geqVDRLKN
aat_ecoli  296  .kganrdfsfiikqnGMFSFSGlt.................keqVLRLRE
tyrb_ecoli 297  .empernfdyllnqrGMFSYTGls.................aaqVDRLRE
phhc_pseae 295  .hglaerfahvgaqrGMFSYTGls.................pqqVARLRD
2dkb       295  .....fdcigdvrgrGLLLGVEivkdr.....rtkepadglgakITRECM
gabt_mycle 299  .....ddrigdvrgrGAMIAVElvksg......taepdpeltekVATAAH
argd_bacsu 272  ......pfvkqirgkGLMLGIEc...............dgpvadIIAELQ
oat_human  280  ......dvvtavrgkGLLNAIVi...........ketkdwdawkVCLRLR
oat_bacsu  279  ......pvikevrgrGLFIGVEl...............teaarpYCERLK
argd_anasp 282  ....yphhltevrgwGLINGLEl...........aadipltaadVVKAAI
oat_ecoli  285  ....ypdlvqeargkGMLMAIEfvd...neigynfase.....mFRQRVL
2gsaA      282  ....tghaacggqvsGMFGFFFtegp.vhnyedakksdlqkfsrFHRGML
gsa_pseae  282  ....agipfvttqagGMFGLYFsgadaivtfedvmasdverfkrFFHLML
gsa_metja  281  ....hnikakvyniaSMFQIYFndke.vvnyeiakqsdtekfmkYFWRLL
gsab_bacsu 282  ....hgititvnrlkGALTVYFsdek.venyeqaersdgetfstFFKLML
gsa_helpy  281  ....ynialetlnmgSMFGFFFnena.vhdfddalksdtemfakFHQKML
gsa_mycle  281  ....agvphqipragNMFSVFFseap.vtdfasacnsqvwrypaFFHALL
1ax4A      287  .....agipiqyptgGHAVFVDckkl.vpqipgdqf...paqavINALYL
tnaa_entae 289  .....ggipiqyptgGHAVFVDakll.lphippeqf...pahalNNELYL
tna2_symth 282  .....agipiqwpvgGHAVFIDaakf.lphipwdqf...pghalTVALYQ
tnaa_ecoli 297  .....igvvcq.qagGHAAFVDagkl.lphipadqf...paqalACELYK
tpl_erwhe  284  .....agvpiveptgGHAVFLDarrf.cphltqdqf...paqslAASIYM
tpl_symth  284  .....agipivqpigGHAVFLDaraf.lphipqdqf...paqalAAALYV

1ajsA      329  QKHIYLLps.....................gRINMCglttknlDYVATSI
aat2_arath 330  EFHIYMTsd.....................gRISMAglssktvPHLADAM
aatm_human 330  EFSIYMTkd.....................gRISVAgvtssnvGYLAHAI
aatc_yeast 337  THAVYLVas.....................gRASIAglnqgnvEYVAKAI
aatm_lupan 330  KWHVYMTkd.....................gRISLAglslakcEYLADAI
aat_haein  328  EFAIYAVrs.....................gRINVAgitedniRYLCESI
aat_ecoli  328  EFGVYAVas.....................gRVNVAgmtpdnmAPLCEAI
tyrb_ecoli 329  EFGVYLIas.....................gRMCVAglntanvQRVAKAF
phhc_pseae 327  EHAVYLVss.....................gRANVAglharrlGRLAQAI
2dkb       335  NLGLSMNiv.............qlpgmggvfRIAPPl..tvseDEIDLGL
gabt_mycle 338  ATGVIILtc...............gmfgniiRLLPPl..tisdELLAEGL
argd_bacsu 301  TLGLLVLpa.................gperdSAAAPl..tvtkDEIAEAV
oat_human  313  DNGLLAKpt.................hgdiiRFAPPl..vikeDELRESI
oat_bacsu  308  EEGLLCKet.................hdtviRFAPPl..iiskEDLDWAI
argd_anasp 317  NEGLLLVpa.................gpkvvRFVPPl..ivteAEINTAL
oat_ecoli  323  VAGTLNNa....................ktiRIEPPl..tltiEQCELVI
2gsaA      327  EQGIYLAps.................qfeagFTSLAh....teEDIDATL
gsa_pseae  328  DGGVYLAps.................afeagFTSIAh....gdKELEITL
gsa_metja  326  EKGVFVPps.................qfeccFTSIKh....ddEVVDKTI
gsab_bacsu 327  ERGINLAps.................kyeawFITTAh....teQDIKDTL
gsa_helpy  326  FKGVYLAcs.................sfetgFICEPm....teEMIDLTI
gsa_mycle  326  DAGVYPPcs.................tfeawFVSAAl....ddAAFGRIV
1ax4A      328  ESGVRAVeigsfllgrdpatgeqkhadmefmRLTIAr.rvytnDHMDYIA
tnaa_entae 330  EAGIRSVeigslllgrdpetgkqkaspmellRLTIPr.rvytnDHMDYIA
tna2_symth 323  EGGVRTVevgslvmgrdpetgenvrspfeftRLAIPr.rvytnLHLEDVA
tnaa_ecoli 337  VAGIRAVeigsfllgrdpktgkqlpcpaellRLTIPr.atytqTHMDFII
tpl_erwhe  325  ETGVRSMergivsagrsketgenhrpkletvRLTIPr.rvytyAHMDVVA
tpl_symth  325  HSGVRAMergivsagrnpqtgehnypklelvRLTIPr.rvytdRHMDVVA

1ajsA      358  heavtkiq...
aat2_arath 359  haavtrl....
aatm_human 359  h.qvtk.....
aatc_yeast 366  devv.......
aatm_lupan 359  idsfhyvs...
aat_haein  357  vkvl.......
aat_ecoli  357  vavl.......
tyrb_ecoli 358  aavm.......
phhc_pseae 356  aq.........
2dkb       370  sllgqaieral
gabt_mycle 371  dilsril....
argd_bacsu 332  sklkqaiah..
oat_human  344  eiinkti....
oat_bacsu  339  ekikhvlrna.
argd_anasp 348  kllekala...
oat_ecoli  351  kaarkala...
2gsaA      356  aaartvmsal.
gsa_pseae  357  naaekafaa..
gsa_metja  355  kamedvfeg..
gsab_bacsu 356  tavedafkh..
gsa_helpy  355  akadesfde..
gsa_mycle  355  dalpgaaaa..
1ax4A      377  daliglkekfa
tnaa_entae 379  daliavkaraa
tna2_symth 372  etvinafqkre
tnaa_ecoli 386  eafkhvkenaa
tpl_erwhe  374  dgiiklyqhke
tpl_symth  374  ysvkhlwkerd

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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