1pfc - reference 1


Name                 immunoglobulin PFc fragment

Number of sequences              5
Alignment Length                 123
Longest Sequence                 117
Shortest Sequence                108
Average Percent Identity         28
Maximum Percent Identity         39
Minimum Percent Identity         23

Sequence Name    SWISSPROT Accession
gc2_cavpo            P01862         
alc_mouse            P01878         
1yuh                 P01726         
1mim                 P01834         
1nld                 P01864         

Family   gc2_cavpo alc_mouse 1yuh 1mim 1nld


gc2_cavpo    1  .ktisktkgaprmPDVYTLPPSRDEL.skskvSVTCLIINFFPADIHVEW
alc_mouse    1  ..tiakvtvntfpPQVHLLPPPSEELlanellSLTCLVRAFNPKEVLVRW
1yuh         1  .tkltvlgqpkssPSVTLFPPSSEEL.etnkaTLVCTITDFYPGVVTVDW
1mim         1  gtkleikr.tvaaPSVFIFPPSDEQL.ksgtaSVVCLLNNFYPREAKVQW
1nld         1  .ttvtvssasttaPSVYPLAPVSGDQ.tnssvTLGCLVKGYFPEPVTLTW

gc2_cavpo   49  asnrvvsekpeykntppieda.......dgSYFLYSKLTVDKSAWDQGTV
alc_mouse   49  lhgn....eelspesylveplkepgfegatTYLVTSVLRVSAETWKQGDQ
1yuh        49  kvdgtpvtegmettqpskqs........nnKYMASSYLTLSARAWERHAS
1mim        49  kvdnalqsgnsqesvteqdsk.......dsTYSLSSTLTLSKADYEKHKV
1nld        49  nsg..slssgvhtfpavlqs.........dLYTLSSSVTVTSSPWPS.ET

gc2_cavpo   92  YTCSVMHealhnhvtqkaisrsp
alc_mouse   95  YSCMVGHealpmnftqktidrls
1yuh        91  YSCQVTHeg..htve.kslsra.
1mim        92  YACEVTHqglsspvt.ksfnrg.
1nld        87  ITCNVAHpasstkvdkkieprg.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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