1lcf - reference 1


Name                 lactoferrin																			

Number of sequences              6
Alignment Length                 747
Longest Sequence                 691
Shortest Sequence                662
Average Percent Identity         49
Maximum Percent Identity         63
Minimum Percent Identity         40

Sequence Name    SWISSPROT Accession
1lcf                 P02788         
trfe_rabit           P19134         
trf2_salsa           P80429         
trfe_xenla           P20233         
trfm_human           P08582         
1aov                 P56410         

Family   1lcf trfe_rabit trf2_salsa trfe_xenla trfm_human 1aov


1lcf         1  .grrrsVQWCAVSNPEATKCFQWQRNMRkvr...gppVSCLKRDSPIQCI
trfe_rabit   1  ....ktVRWCAVNDHEASKCANFRDSMKkvlpedgprIICVKKASYLDCI
trf2_salsa   1  ......VKWCVKSEQELRKCHDLAAKVAe........FSCVRKDGSFECI
trfe_xenla   1  ..kekqVRWCVKSNSELKKCKDLVDTCKnk....eikLSCVEKSNTDECS
trfm_human   1  .....eVRWCATSDPEQHKCGNMSEAFReagi..qpsLLCVRGTSADHCV
1aov         1  appkttVRWCTISSAEEKKCNSLKDHMQqer....vtLSCVQKATYLDCI

1lcf        47  QAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYgterqprTHYYAVA
trfe_rabit  47  KAIAAHEADAVTLDAGLVHEAGLTPNNLKPVVAEFYgskenpkTFYYAVA
trf2_salsa  37  QAIKGGEADAITLDGGDIYTAGLTNYGLQPIIAEDYg..edsdTCYYAVA
trfe_xenla  45  TAIQEDHADAICVDGGDVYKGSLQPYNLKPIMAENYgshtetdTCYYAVA
trfm_human  44  QLIAAQEADAITLDGGAIYEAG.KEHGLKPVVGEVYd..qevgTSYYAVA
1aov        47  KAISNNEADAISLDGGQVFEAGLAPYKLKPIAAEVYersggstTSYYAVA

1lcf        97  VVKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIGTL..rpflnwtgppep
trfe_rabit  97  LVKKGSNFQLNELQGKKSCHTGLGRSAGWNIPIGLL....ycdlpeprkp
trf2_salsa  85  VAKKGTAFGFKTLRGKKSCHTGLGKSAGWNIPIGTLvtesqirwagiedr
trfe_xenla  95  VVKKSSKFTFDELKDKKSCHTGIGKTAGWNIIIGLLlerkllkwagpdse
trfm_human  91  VVRRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLvesgrlsvmgcd..
1aov        97  VVKKGTDFMIKDLRGKTSCHTGLGRSAGWNIPIGTLihrediewegiesg

1lcf       145  .ieaAVARFFSASCVPGAdkgqf.pnLCRLCAGt..genkcafssqePYF
trfe_rabit 143  .lekAVASFFSGSCVPCAdgadf.pqLCQLCPG.......cgcssvqPYF
trf2_salsa 135  pvesAVSDFFNASCAPGAtmg...skLCQLCKGd......csrshkePYY
trfe_xenla 145  twrnAVSKFFKASCVPGAke....pkLSQLCAGi..kehkcsrsnnePYY
trfm_human 139  .vlkAVSDYFGGSCVPGAgetsysesLCRLCRGdssgegvcdkspleRYY
1aov       147  iseqAVAKFFSASCVPGAtie...qkLCRQCKGd..aktkclrng..PYS

1lcf       191  SYSGAFKCLKDGAGDVAFIRESTVfedlsd........eaerDEYELLCP
trfe_rabit 184  GYSGAFKCLKDGLGDVAFVKQETIfenlps........kderDQYELLCL
trf2_salsa 176  DYAGAFQCLKDGAGDVAFIKPLAVp.............aaekASYELLCK
trfe_xenla 189  NYAGAFKCLQDDQGDVAFVKQSTVp.............eefhKDYELLCP
trfm_human 188  DYSGAFRCLAEGAGDVAFVKHSTVlentdgktlpswgqallsQDFELLCR
1aov       190  GYSGAFQCLKDGKGDVAFVKHTTVqenap..........eekDEYELLCL

1lcf       233  DNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLrqaqekfgkdk
trfe_rabit 226  DNTRKPVDEYEQCHLARVPSHAVVARSVDGKEDLIWELLnqaqehfgkdk
trf2_salsa 213  DGTRASIDSYKTCHLARVPAHAVVSRKDPELANRIYNKLvavk.......
trfe_xenla 226  DNTRKSIKEYKNCNLAKVPAHAVLTRGRDDKSKDIIEFLqeaq......k
trfm_human 238  DGSRADVTEWRQCHLARVPAHAVVVR.ADTDGGLIFRLLnegqrlfsheg
1aov       230  DGSRQPVDSYKTCNWARVAAHAVVAR.DDSKIDDIWSFLgmqayslgvdt

1lcf       283  spkfqlfgspsg....qKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAI
trfe_rabit 276  sgdfqlfssphg.....KNLLFKDSAYGFFKVPPRMDANLYLGYEYVTAV
trf2_salsa 256  ..dfnlfssdgya...aKNLMFKDSAQKLVQLPTTTDSFLYLGAEYMSTI
trfe_xenla 270  tqecklfsspvwg....RDLIFKDSAVSLIPLPSSMDSFLFLGADYFQCI
trfm_human 287  s.sfqmfsseayg...qKDLLFKDSTSELVPIATQT.YEAWLGHEYLHAM
1aov       279  tsdfhlfgppgkkdpvlKDLLFKDSAIMLKRVPELMDSQLYLGFEYYSAI

1lcf       329  QNLrks..eeevaarrarVVWCAVGEQELRKCNQWSgls.....egsVTC
trfe_rabit 321  RNLregicpdplqdeckaVKWCALSHHERLKCDEWSvts.....gglIEC
trf2_salsa 301  RSLkksqatgas...sraIKWCAVGHAEKGKCDTWTinsfadg.eskISC
trfe_xenla 316  QALkegvkeddsaa.qvkVRWCTQSKAEKTKCDDWTtis.....ggaIEC
trfm_human 332  KGLlcdpnrlpp.....yLRWCVLSTPEIQKCGDMAvafrrqrlkpeIQC
1aov       329  QSLrkdqltvgp..renkIQWCAVGKDEKSKCDRWSvvs.....ngeVEC

1lcf       372  SSASTTEDCIALVLKGEADAMSLDGGYVYTAGk.cglvpvlaenyksqqs
trfe_rabit 366  ESAETPEDCIAKIMNGEADAMSLDGGYVYIAGq.cglvpvlaenyestd.
trf2_salsa 347  QDAPTVEECIKKIMRKEADAIAVDGGEVYTAGk.cglvpvmveqydadl.
trfe_xenla 360  TEASTAEECIVQILKGDADAVTLDGGYMYTAGl.cglvpvmgeyydqddl
trfm_human 377  VSAKSPQHCMERIQAEQVDAVTLSGEDIYTAGkkyglvpaagehyaped.
1aov       372  TILDDNKDCIVKITKGEADAISLDGGFVYTAGv.cglvpvvgesyedetq

1lcf       421  sdpdpncvdrpve..gYLAVAVVRRsdt.sLTWNSVKGKKSCHTAVDRTA
trfe_rabit 414  ......ckkapee..gYLSVAVVKKsnp.dINWNNLEGKKSCHTAVDRTA
trf2_salsa 395  ......cs.apgeassYYAVAVAKKgs..gLTWKTLKGKRSCHTGLGRTA
trfe_xenla 409  tpcqrscsqakgv...YYAVAIVKKgt..qVSWSNLRGVKTCHTAVGRTA
trfm_human 426  ......ssns......YYVVAVVRRdsshaFTLDELRGKRSCHAGFGSPA
1aov       421  ......cskdeeqpayYFAVAVVKKss..aITWNNLQGKKSCHTAVGRTA

1lcf       468  GWNIPMGLLfnqT....GSCK....fdEYFSQSCAPgsdpr...SNLCAL
trfe_rabit 455  GWNIPMGLLynrI....NHCR....fdEFFRQGCAPgsqkn...SSLCEL
trf2_salsa 436  GWNIPMGLIhqeT....NDCD....ftKYFSKGCAPgsevg...SPFCAQ
trfe_xenla 454  GWNIPVGLItseT....ANCD....faSYVGESCAPgsdvk...SNLCAL
trfm_human 464  GWDVPVGALiqrGFIRPKDCDvltavsEFFNASCVPvnnpknypSSLCAL
1aov       463  GWNIPMGLIhnkT....GSCD....fdDYFSEGCAPgsppn...SRLCKL

1lcf       507  CIGdeqgen....kCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQ
trfe_rabit 494  CIGpsv........CAPNNREGYYGYTGAFRCLVE.KGDVAFVKSQTVLQ
trf2_salsa 475  CKGsgkarggdedrCKARSEEQYYGYTGAFRCLVEDAGDVAFIKHTIVPE
trfe_xenla 493  CIGdpeklserekkCSPSASEAYYGYSGAFRCLVE.KGQVGFAKHTTVFE
trfm_human 514  CVGdeqgrn....kCVGNSQERYYGYRGAFRCLVENAGDVAFVRHTTVFD
1aov       502  CQGsgenlle...kCVASSHEKYYGYTGALRCLVE.QGDVAFIKHSTVGE

1lcf       553  NTDGnnneaWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSR
trfe_rabit 535  NTGGrnsepWAKDLKEEDFELLCLDGTRKPVSEAHNCHLAKAPNHAVVSR
trf2_salsa 525  STDGngpd.WAKDLKSSDFELLCQDGTTQPVTKFSECHLAKVPAHAVITR
trfe_xenla 542  NTDGknpagWAKDLKSEDFELLCPDGSRAPVTDYKRCNLAEVPAHAVVTL
trfm_human 560  NTNGhnsepWAAELRSEDYELLCPNGARAEVSQFAACNLAQIPPHAVMVR
1aov       548  NVSGsnkddWAKGLTRDDFELLCTNGKRAKTMDYKTCHLAKVPTHAVVAR

1lcf       603  MDK.VerLKQVLLHQQAKFGrngsdcpdkFCLFQSe...tKNLLFNDNTE
trfe_rabit 585  KDK.AacVKQKLLDLQVEYGntvadcsskFCMFHSk...tKDLLFRDDTK
trf2_salsa 574  PET.RgdVVSILLELQAKFGssgsd..ssFRMFQSsv..eKNLLFKDSTK
trfe_xenla 592  PDK.ReqVAKIVVNQQSLYGrkgfq.kdiFQMFQStg..gKDLLFKDSTQ
trfm_human 610  PDTNIftVYGLLDKAQDLFGddhnk..ngFKMFDSsnyhgQDLLFKDATV
1aov       598  PEK.AnkIRELLEGQEKLFGlhgte.kerFMMFQSq...tKDLLFKALTK

1lcf       649  CLARLHGKTTYEKYLGPQYVAGItnlkk..cs..tsplleaceflrk
trfe_rabit 631  CLVDLRGKNTYEKYLGADYIKAVsnlrk..cs..tsrlleactfhk.
trf2_salsa 619  CLQEIPKGTKYQDFLGKEYMIAMqslrk..csdstsdlekactfhs.
trfe_xenla 638  CLLEIPSKTTMQEFLGDKYHTAVtslnk..cs..tsrllaactf...
trfm_human 658  RAVPVGEKTTYRGWLGLDYVAALegmssqqcs...............
1aov       643  CLVKLRQGITYKEFLGDEYYASVaslnt..cn..psdllqvctfled

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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