1csp - reference 1


Name                 cold shock protein

Number of sequences              5
Alignment Length                 76
Longest Sequence                 70
Shortest Sequence                66
Average Percent Identity         51
Maximum Percent Identity         60
Minimum Percent Identity         43

Sequence Name    SWISSPROT Accession
1csp                 P32081         
1mef                 P15277         
csp7_strcl           Q01761         
grp2_nicsy           P27484         
cbfx_mouse           P27817         



1csp         1  ...mleGKVKWFNSEKGFGFIev.EGQDDVFVHFSAIQg....egFKTLE
1mef         1  msgkmtGIVKWFNADKGFGFItpdDGSKDVFVHFSAIQn....dgYKSLD
csp7_strcl   1  ...matGTVKWFNAEKGFGFIaqdGGGPDVFVHYSAINa....tgFRSLE
grp2_nicsy   1  .....kGTVKWFSDQKGFGFItpdDGGEDLFVHQSGIRs....egFRSLA
cbfx_mouse   1  ....vlGTVKWFNVRNGYGFInrnDTKEDVFVHQTAIKknnprkyLRSVG

1csp        43  EGQAVSFEIVEGnrg.PQAANVTKEa
1mef        47  EGQKVSFTIESGakg.PAAGNVTSL.
csp7_strcl  44  ENQVVNFDVTHG.eg.PQAENVSPA.
grp2_nicsy  42  EGETVEFEVESGgdgrTKAVDVTGP.
cbfx_mouse  47  DGETVEFDVVEGekg.AEAANVTGP.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

Back to Index