1ycc - reference 4


Name                 cytochrome c

Number of sequences              9
Alignment Length                 236
Longest Sequence                 190
Shortest Sequence                105
Average Percent Identity         36
Maximum Percent Identity         57
Minimum Percent Identity         21

Sequence Name    SWISSPROT Accession
1ycc                 P00044         
1ccr                 P00055         
1cry                 P00083         
1hro                 P00080         
2c2c                 P00092         
155c                 P00096         
1c2r                 P00094         
1cxa                 P00095         
1etp                 Q52369         

Family   1ycc 1ccr 1cry 1hro 2c2c 155c 1c2r 1cxa
Family   1etp


1ycc         1  ...tefkaGSAKKGATLFktRCLQCHtv..ekgg.....phkvgpnlhgi
1ccr         1  asfseappGNPKAGEKIFktKCAQCHtv..dkga.....ghkqgpnlngl
1cry         1  ........QDAASGEQVFk.QCLVCHsi..gpga.....knkvgpvlngl
1hro         1  ....sappGDPVEGKHLFhtICITCHtd..ikga......nkvgpslygv
2c2c         1  .......eGDAAAGEKVSk.KCLACHtf..dqgg.....ankvgpnlfgv
155c         1  ......neGDAAKGEKEFn.KCKACHmiqapdgtdi..kggktgpnlygv
1c2r         1  ........GDAAKGEKEFn.KCKTCHsiiapdgteiv.kgaktgpnlygv
1cxa         1  ......qeGDPEAGAKAFn.QCQTCHvivddsgttiagrnaktgpnlygv
1etp         1  .......aGDAEAGQGKVa.VCGACHgv..........dgnspapn....

1ycc        41  fgrhsgqaegys.YTDANIKKn.....vlwdennmseyltnp....kkyi
1ccr        44  fgrqsgttpgys.YSTADKNMa.....viweentlydyllnp....kkyi
1cry        35  fgrhsgtiegfa.YSDANKNSg.....itwteevfreyirdp....kaki
1hro        39  vgrhsgiepgyn.YSEANIKSg.....ivwtpdvlfkyiehp....qkiv
2c2c        36  fentaahkdnya.YSESYTEMkakg..ltwteanlaayvknp....kafv
155c        42  vgrkiaseegfk.YGEGILEVaeknpdltwteanlieyvtdp....kplv
1c2r        41  vgrtagtypefk.YKDSIVALgasg..fawteediatyvkdpgaflkekl
1cxa        44  vgrtagtqadfkgYGEGMKEAgakg..lawdeehfvqyvqdp....tkfl
1etp        29  fpklag..qger.YLLKQLQDikag.....stpgapegvg......rkvl

1ycc        81  pg........tkmafgglkkekdrNDLITYLKKace..............
1ccr        84  pg........tkmvfpglkkpqerADLISYLKEats..............
1cry        75  pg........tkmifagvkdeqkvSDLIAYIKQfnadgsk..........
1hro        79  pg........tkmgypgqpdpqkrADIIAYLETlk...............
2c2c        79  leksgdpkakskmtfk.ltkddeiENVIAYLKTlk...............
155c        87  kkmtddkgaktkmtf...kmgknqADVVAFLAQddpda............
1c2r        88  dd....kkaktgmaf...klakggEDVAAYLASvvk..............
1cxa        88  keytgdakakgkmtfk.lkkeadaHNIWAYLQQvavrp............
1etp        65  em........tgmldp..lsdqdlEDIAAYFSSqkgsvgyadpalakqge

1ycc       109  ..................................................
1ccr       112  ..................................................
1cry       107  ..................................................
1hro       106  ..................................................
2c2c       113  ..................................................
155c       122  ..................................................
1c2r       117  ..................................................
1cxa       125  ..................................................
1etp       105  klfrggkldqgmpactgchapngvgndlagfpklggqhaaytakqltdfr

1ycc       109  ....................................
1ccr       112  ....................................
1cry       107  ....................................
1hro       106  ....................................
2c2c       113  ....................................
155c       122  ....................................
1c2r       117  ....................................
1cxa       125  ....................................
1etp       155  egnrtndgdtmimrgvaaklsnkdiealssyiqglh

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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