1ubi - reference 3


Name                 ubiquitin	cysteine	

Number of sequences              22
Alignment Length                 121
Longest Sequence                 97
Shortest Sequence                69
Average Percent Identity         20
Maximum Percent Identity         70
Minimum Percent Identity         5

Sequence Name    SWISSPROT Accession
1ubi                 P02248         
ned8_mouse           P29595         
ubil_caeel           Q07372         
dsk2_yeast           P48510         
bat3_human           P46379         
r23a_human           P54725         
1guaB                P10113         
kraa_human           P10398         
rmil_chick           Q04982         
kraf_drome           P11346         
kraf_caeel           Q07292         
1awd                 P56408         
ferv_anava           P46047         
fer2_synp6           P08451         
dmpp_psesp           P19734         
memc_metca           P22868         
rfbi_salty           P26395         
xylz_psepu           P23101         
ascd_yerps           P37911         
2pia                 P33164         
vanb_pses9           P12580         
fer_samni            P00226         

Family   1ubi ned8_mouse ubil_caeel dsk2_yeast bat3_human r23a_human
Family   1guaB kraa_human rmil_chick kraf_drome kraf_caeel
Family   1awd ferv_anava fer2_synp6 dmpp_psesp memc_metca rfbi_salty xylz_psepu ascd_yerps 2pia vanb_pses9 fer_samni


1ubi         1  ......MQIFVkt.ltgktITLEVEPSDTIENVKAKiqdkeg...ippd.
ned8_mouse   1  ......MLIKVkt.ltgkeIEIDIEPTDKVERIKERveekeg...ippq.
ubil_caeel   1  .......MVFVkt.lh.rtLFLEVAANEDVLSIKQKieaaeg...ipae.
dsk2_yeast   1  ......LNIHIks.gqdk.WEVNVAPESTVLQFKEAinkang...ipva.
bat3_human   1  ......LEVLVkt.ldsqtRTFIVGAQMNVKEFKEHirasvs...ipse.
r23a_human   1  ......VTITLkt.lqqqtFKIRMEPDETVKVLKEKieaekgrdafpva.
1guaB        1  ......NTIRVfl.pnkqrTVVNVRNGMSLHDCLMKalkvrg...lqpec
kraa_human   1  ......GTVKVyl.pnkqrTVVTVRDGMSVYDSLDKalkvrg...lnqdc
rmil_chick   1  ......PIVRVfl.pnkqrTVVPARCGVTVRDSLKKalmmrg...lipec
kraf_drome   1  ....pkILLRAhl.pnqqrTSVEVISGVRLCDALMKalklrq...ltpdm
kraf_caeel   1  ......KMIMVhl.pfdqhSRVEVRPGETARDAISKllkkrn...itpql
1awd         1  ......YKVTLkt.psg.eETIECPEDTYILDAAEEa.gld....lpysc
ferv_anava   1  ......YQVRLinkkraidITIPVDENTTILDAAEQq.die....lpfsc
fer2_synp6   1  ......YQVEViy..qgqsQTFTADSDQSVLDSAQAa.gvd....lpasc
dmpp_psesp   1  ......YNVTIe..ptg..EVIEVEDGQTILQAALRq.gvw....lpfac
memc_metca   1  ......HTITAvt.edgesLRFECRSDEDVITAALRq.nif....lmssc
rfbi_salty   1  ....msHIIKIf..psn..IEFSGREDESILDAALSa.gih....lehsc
xylz_psepu   1  ......HKVATdf.edgvtRFIDANTGETVADAAYRq.gin....lpldc
ascd_yerps   1  ......LNVKLh..psg..IIFTSDGTSTILDAALDs.nih....ieysc
2pia         1  arentpFTVRLs..rsg..TSFEIPANRSILEVLRDa.nvr....vpssc
vanb_pses9   1  ....raFEGRLa..rsg..LTLQVPAERSVAQVLDDa.gvc....iplac
fer_samni    1  ......YKVKLit.pdg.pQEFECPDDVYILEHAEEl.gid....ipysc

1ubi        40  .......QQRLIFa.......................GKQLedgr..tLS
ned8_mouse  40  .......QQRLIYs.......................GKQMndek..tAA
ubil_caeel  38  .......EQRLCYa.......................GRQLed......S
dsk2_yeast  39  .......NQRLIYs.......................GKILkddq..tVE
bat3_human  40  .......KQRLIYq.......................GRVLqddk..kLQ
r23a_human  43  .......GQKLIYa.......................GKILsddv..pIR
1guaB       41  .......CAVFRLlheh...................kGKKArldwntdAA
kraa_human  41  .......CVVYRLi......................kGRKTvtawdtaIA
rmil_chick  41  .......CAVYRIq......................dGEKKpigwdtdIS
kraf_drome  43  .......CEVSTTh......................sGRHIip.whtdIG
kraf_caeel  41  .......CHVNASsdpkq..................eSIELsltmeeiAS
1awd        38  ragacssCAGKVEsgevdqsdqs.flddaqmg....kGFVL......tCV
ferv_anava  40  qsgscssCVAKVVegevdqseqv.fldeeqma....kGFIV......lCV
fer2_synp6  38  ltgvcttCAARILsgevdqpdam.gvgpepak....qGYTL......lCV
dmpp_psesp  36  ghgtcatCKVQVVegevdigeaspfalmdierd...eRKVL......aCC
memc_metca  39  reggcatCKALCSegdydlkgcsvqalppeeee...eGLVL......lCR
rfbi_salty  38  kagdcgiCESDLLagevvdskgnifgq.........gDKIL......tCC
xylz_psepu  39  rdgacgaCKCFAEsgryslgee..yiedalseaeaeqGYVL......tCQ
ascd_yerps  36  kdgtcgsCKAILIsgevdsaent.flteedva....kGAIL......tCC
2pia        42  esgtcgsCKTALCsgeadhrdm..vlrdde......kGTQIm.....vCV
vanb_pses9  38  eqgicgtCLTRVLdgepehrds..fltdaera....rNDQFt.....pCC
fer_samni   38  ragscssCAGKLVagsvdqsdqs.flddeqie....eGWVL......tCV

1ubi        58  DYNiqkestLHLVlrlrgg..
ned8_mouse  58  DYKilggsvLHLVlalrg...
ubil_caeel  52  DCGidseatIYVNlellg...
dsk2_yeast  57  SYHiqdghsVHLVks......
bat3_human  58  EYNv.ggkvIHLVer......
r23a_human  61  DYRideknfVVVMvtktka..
1guaB       65  SLI...geeLQVDfl......
kraa_human  62  PLD...geeLIVEv.......
rmil_chick  62  WLT...geeLHVEv.......
kraf_drome  63  TLH...veeIFVRl.......
kraf_caeel  66  RLP...gneLWVH........
1awd        77  AYPt...sdVTILthqeaaly
ferv_anava  79  SYPr...sdCTIRthqepyl.
fer2_synp6  77  AYPr...sdLKIEthkedel.
dmpp_psesp  77  AIPl...sdLVIEadvda...
memc_metca  80  TYPk...tdLEI.........
rfbi_salty  73  CKPk...taLELNahffpel.
xylz_psepu  81  MRAe...sdCVIRvpaasdv.
ascd_yerps  75  SKAk...sdIELDvnyypel.
2pia        79  SRAk..saeLVLDl.......
vanb_pses9  77  SRAr..sacLVLD........
fer_samni   77  AYPk...sdVTI.........

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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