actin - reference 1


Name                 actin										

Number of sequences              5
Alignment Length                 415
Longest Sequence                 395
Shortest Sequence                379
Average Percent Identity         45
Maximum Percent Identity         55
Minimum Percent Identity         36

Sequence Name    SWISSPROT Accession
act2_dauca           P23344         
act_eupcr            P20360         
arp1_p_car           P42023         
arp1_s_cer           P38696         
arp2_c_ele           P53489         

Family   act2_dauca act_eupcr arp1_p_car arp1_s_cer arp2_c_ele


act2_dauca   1  ....madggediQPLVCDNGTGMVKAGFAGDDAPRAVFPSivvGRPRHTG
act_eupcr    1  ....mseeenakEAIVVDNGSGVVKAGFAGENQPCSVFPSvv.AKPKTKQ
arp1_p_car   1  ...mefndvltnQPICIDNGSGVIKAGFAGEDQPKSFFPSyv.GRPKHLK
arp1_s_cer   1  mdqlsdsyalynQPVVIDNGSGIIKAGFSGEERPKALEYClv.GNTKYDK
arp2_c_ele   1  .....mds.qgrKVIVVDNGTGFVKCGYAGTNFPAHIFPSmv.GRPIVRS

act2_dauca  47  vmv..gmgqkDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKISHHTF
act_eupcr   46  viv.ggagnkDCFVGDERQQKRGVCTLSYPIKSGMIKDWDGMQKIWDYTF
arp1_p_car  47  ima..gaiegDIFIGNKAQELRGLLKIKYPIEHGIVVDWDDMERIWQFIY
arp1_s_cer  50  vml..eglqgDTFIGNNAQKLRGLLKLRYPIKHGVVEDWDSMELIWSYVL
arp2_c_ele  44  tqrvgnieikDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTF

act2_dauca  95  Y.NELRVAP.EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYvlsrl
act_eupcr   95  Y.NELRIET.ENHPVLLTEAPLNPKQNRENMCRIMFEEYDFPSMYiq..i
arp1_p_car  95  T.EELKTVS.EEHPVLLTEAPLNPRTNRDQAAQVFFETFNVPALFts..i
arp1_s_cer  98  N.EVLQLQNIGEHPLLITEAPMNPLKNREQMAQVLFETFDVSALYvs..n
arp2_c_ele  94  GPEKLDIDP.KECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYva..v

act2_dauca 143  rscLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT
act_eupcr  141  qavLSLYSAGRTTGIVVDSGDGVTHVVPIFEGYQIPHAIEKILLAGRDLT
arp1_p_car 141  qavLSLYASGRTTGVVLDSGDGVTHAVPIYEGFAMPSAIRRIDIAGRDVT
arp1_s_cer 145  pavLSLYASGRTTGCVVDCGEGYCSTVPIYDGFALPASMMRMDIGGADIT
arp2_c_ele 141  qavLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTRRLDIAGRDIT

act2_dauca 193  DGLMKILter.gYMFTTTA..tgMSYMKEKLAYVALVMSKSWRlprarl.
act_eupcr  191  DYMCRILkdd.dYHFETTAeketVRDIKEKLCYVADDYEAELKkagegg.
arp1_p_car 191  EYLQLLLrks.gTIFHTSAekeiVRIIKEKCSYVTLDPRKEEKewinasi
arp1_s_cer 195  EQLQFQLrksagVSLFSSSereiVRTMKEKVCYLAKNIKKEEEkylqgt.
arp2_c_ele 191  KYLIKLLlqr.gYNFNHSAdfetVRQMKEKLCYIAYDVEQEERlalett.

act2_dauca 239  ......lveknYELPDGQVITIGAVRGSGCPEVLFQPSMIGMESAGIHET
act_eupcr  239  ......eleesYALPDGRPLKISTQR.FQCPEFLFQPDLGGRECKSVHQL
arp1_p_car 240  sggkdytkeeeFKLPDGNVLRLGAER.FRAPEILFDPEIIGSEYSGIHQV
arp1_s_cer 244  .....qdlistFKLPDGRCIEVGNDR.YRAPEILFSPQIIGLGYDGLSDM
arp2_c_ele 239  ......vlsqqYTLPDGRVIRLGGER.FEAPEILFQPHLINVEKAGLSEL

act2_dauca 283  TYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGscyasMSKEITALa.....
act_eupcr  282  TYDSIMTCDLDVRKDLYANIILSGGTTMFPG.lgerLYKEMKDLa.....
arp1_p_car 289  VVDAISRVDLDLRKSLFGNIVLSGGSTLTRG.fgdrLLSEIRRLa.....
arp1_s_cer 288  CMQSIWKVDLDLRKPLLSSIILSGGTTTLKG.fgdrMLWDLEALt.....
arp2_c_ele 282  LFGCIQASDIDTRLDFYKHIVLSGGTTMYPG.lpsrLEKELKQLyldrvl

act2_dauca 328  ......pssMKIKVVAPPERKYSVWIGGSILASL.stfqq.MWISKGEYD
act_eupcr  326  ......pqtMKVKVIASPDRKYAVWRGGSTLAKL.stfag.MWVTKEDYA
arp1_p_car 333  ......vkdVKIKIFAPPERKYSTWIGGSILASL.stfrk.MWVSAEEYQ
arp1_s_cer 332  ......kgtSKIKIIAPSERKYTTWIGGSILTGL.stfqr.LWTKKSDWL
arp2_c_ele 331  hgntdafqkFKIRIEAPPSRKHMVFLGGAVLANLmkdrdqdFWVSKKEYE

act2_dauca 370  Esgpsivhrkcf...
act_eupcr  368  Efgesivhrkci...
arp1_p_car 375  Edpd.iihrksi...
arp1_s_cer 374  Edstrvysnlm....
arp2_c_ele 381  Eggiarcmaklgika

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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