1csp - reference 4
Name major cold shock protein
Number of sequences 6
Alignment Length 1003
Longest Sequence 711
Shortest Sequence 67
Average Percent Identity 32
Maximum Percent Identity 60
Minimum Percent Identity 14
Sequence Name SWISSPROT Accession
grp2_nicsy P27484
cspd_haein P46449
1csp P32081
1mjc P15277
RHO_ECOLI P03002
PNP_ECOLI P05055
Family grp2_nicsy cspd_haein 1csp 1mjc RHO_ECOLI PNP_ECOLI
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 1 mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkka
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 51 kpgqdffpltvnyqertyaagripgsffrregrpsegetliarlidrpir
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 101 plfpegfvnevqviatvvsvnpqvnpdivamigasaalslsgipfngpig
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 151 aarvgyindqyvlnptqdelkeskldlvvagteaavlmveseaqllsedq
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 201 mlgavvfgheqqqvviqninelvkeagkprwdwqpepvnealnarvaala
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 251 earlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 301 eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqa
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 351 lvtatlgtardaqvldelmgertdtflfhynfppysvgetgmvgspkrre
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 401 ighgrlakrgvlavmpdmdkfpytvrvvseitesngsssmasvcgaslal
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 451 mdagvpikaavagiamglvkegdnyvvlsdilgdedhlgdmdfkvagsrd
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 ..................................................
PNP_ECOLI 501 gisalqmdikiegitkeimqvalnqakgarlhilgvmeqainaprgdise
grp2_nicsy 1 ..................................................
cspd_haein 1 ..................................................
1csp 1 ..................................................
1mjc 1 ..................................................
RHO_ECOLI 1 .........................mnltelkntpvselitlgenmglen
PNP_ECOLI 551 faprihtikinpdkikdvigkggsviralteetgttieieddgtvkiaat
grp2_nicsy 1 ..........................kgtvkwfsdqkGFGFItpdd....
cspd_haein 1 ........................meigivkwfnnakGFGFIsaeg....
1csp 1 ........................mlegkvkwfnsekGFGFIeve.....
1mjc 1 ......................sgkmtgivkwfnadkGFGFItpdd....
RHO_ECOLI 26 larmrkqdiifailkqhaksgedifgdgvleil..qdGFGFLrsadssyl
PNP_ECOLI 601 dgekakhairrieeitaeievgrvytgkvtriv....DFGAFvaig....
grp2_nicsy 21 .ggeDLFVhqsgirsegf....rslaegetvefevesggdg..rtkavdv
cspd_haein 23 .vdaDIFAhysviemdgy....rslkagqkvqfevlhsdkg...shatki
1csp 22 .gqdDVFVhfsaiqgegf....ktleegqavsfeivegnrg...pqaanv
1mjc 25 .gskDVFVhfsaiqndgy....ksldegqkvsftiesgakg...paagnv
RHO_ECOLI 74 agpdDIYVspsqirrf.......nlrtgdtisgkirppkegeryfallkv
PNP_ECOLI 643 .ggkEGLVhisqiadkrvekvtdylqmgqevpvkvlevdrqg..rirlsi
grp2_nicsy 64 tgpd..............................................
cspd_haein 65 ipiadtqe..........................................
1csp 64 tkea..............................................
1mjc 67 tsl...............................................
RHO_ECOLI 117 nevnfdkpenarnkilfenltplhansrlrmergngstedltarvldlas
PNP_ECOLI 690 keateqsqpaaapeapaaeqge............................
grp2_nicsy 68 ..................................................
cspd_haein 73 ..................................................
1csp 68 ..................................................
1mjc 70 ..................................................
RHO_ECOLI 167 pigrgqrglivappkagktmllqniaqsiaynhpdcvlmvlliderpeev
PNP_ECOLI 712 ..................................................
grp2_nicsy 68 ..................................................
cspd_haein 73 ..................................................
1csp 68 ..................................................
1mjc 70 ..................................................
RHO_ECOLI 217 temqrlvkgevvastfdepasrhvqvaemviekakrlvehkkdviillds
PNP_ECOLI 712 ..................................................
grp2_nicsy 68 ..................................................
cspd_haein 73 ..................................................
1csp 68 ..................................................
1mjc 70 ..................................................
RHO_ECOLI 267 itrlarayntvvpasgkvltggvdanalhrpkrffgaarnveeggsltii
PNP_ECOLI 712 ..................................................
grp2_nicsy 68 ..................................................
cspd_haein 73 ..................................................
1csp 68 ..................................................
1mjc 70 ..................................................
RHO_ECOLI 317 atalidtgskmdeviyeefkgtgnmelhlsrkiaekrvfpaidynrsgtr
PNP_ECOLI 712 ..................................................
grp2_nicsy 68 ..................................................
cspd_haein 73 ..................................................
1csp 68 ..................................................
1mjc 70 ..................................................
RHO_ECOLI 367 keellttqeelqkmwilrkiihpmgeidameflinklamtktnddffemm
PNP_ECOLI 712 ..................................................
grp2_nicsy 68 ...
cspd_haein 73 ...
1csp 68 ...
1mjc 70 ...
RHO_ECOLI 417 krs
PNP_ECOLI 712 ...
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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