1ad2 - reference 1


Name                 ribosomal protein l1				

Number of sequences              4
Alignment Length                 219
Longest Sequence                 213
Shortest Sequence                203
Average Percent Identity         30
Maximum Percent Identity         36
Minimum Percent Identity         26

Sequence Name    SWISSPROT Accession
rk1_cyapa            P48125         
rl1_metja            P54050         
rl1_halvo            P41199         
rl1_sulso            P96038         

Family   rk1_cyapa rl1_metja rl1_halvo rl1_sulso


rk1_cyapa    1  e.eqlyepleaiqllkqistakFIETVEVHCRL.GIDPKYNDQQLRATVT
rl1_metja    1  .......vkearelakp...rnFTQSFEFIATLKEIDMRKPENRIKTEVV
rl1_halvo    1  .......vdavsraldeapgrnFRETVDLAVNLRDLDLNDPSKRVDESIV
rl1_sulso    1  dkesliealklalsteynvkrnFTQSVEIILTFKGIDMKKGDLKLREIVP

rk1_cyapa   49  LPNGTGQTLRVAVITRGEkineastagadlvgaeelid.......eiqng
rl1_metja   41  LPHGRGKEAKIAVIGTGDlakqaeelgltvirkeeiee.lgknkrklrki
rl1_halvo   44  LPSGTGQDTQIVVFATGEt..aaedaadevlgpdeled.fgddtdaakdl
rl1_sulso   51  LPKQPSKAKRVLVVPSSEqleyakkaspkvvitreelqklqgqkrpvkkl

rk1_cyapa   92  rldfDCLIATPDMMPQVA.KLGRVLGPRGLMPSPKGGTVTfdlaQAINDF
rl1_metja   90  akahDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANAN..ikPLVERL
rl1_halvo   91  adetDFFVAEAGLMQDIGRYLGTVLGPRGKMPTPLQPDDD..vvETVNRM
rl1_sulso  101  aiqnEWFLINQESMALAGRILGPALGPRGKFPTPLPNTAD..isEYINRF

rk1_cyapa  141  KAGKLEFRNDrtgiVHVLFGKANFSEEALLGNLKAVQEavdrnrpsgvkg
rl1_metja  138  KKTVVINTRDkp.yFQVLVGNEKMTDEQIVDNIEAVLNvva..kkyekgl
rl1_halvo  139  KNTVQLRSRDrr.tFHTRVGADDMTPDEIAENIDVIVRrle..atlekgp
rl1_sulso  149  KRSVIVKTKDqp.qVQVFIGTEDMKPEDLAENAIAVLNai...enkakve

rk1_cyapa  191  kywKSIYITSTMSPSIEVd
rl1_metja  185  yhiKDAYVKLTMGPAVKVk
rl1_halvo  186  lniDSVYVKTTMGPSVEV.
rl1_sulso  195  tnlRNIYVKTTMGKAVKVk

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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