1wit - reference 2
Name twitchin
Number of sequences 22
Alignment Length 120
Longest Sequence 106
Shortest Sequence 85
Average Percent Identity 23
Maximum Percent Identity 55
Minimum Percent Identity 10
Sequence Name SWISSPROT Accession
1wit Q23550
cpsf_chick P16419
cpss_human Q00872
myms_human P52179
vca1_mouse P29533
1tlk P56276
cavt_brala P05548
dcc_human P43146
ptpf_human P10586
mpsf_human P54296
pgbm_mouse Q05793
iml2_drome Q09024
vgr2_mouse P35918
nca2_xenla P36335
axo1_chick P28685
nrg_drome P20241
caml_rat Q05695
cont_mouse P12960
lar_drome P16621
2ncm P13596
1hnf P06729
1vcaA P19320
Family 1wit cpsf_chick cpss_human myms_human vca1_mouse 1tlk cavt_brala dcc_human ptpf_human mpsf_human pgbm_mouse iml2_drome vgr2_mouse nca2_xenla axo1_chick nrg_drome caml_rat cont_mouse lar_drome
Family 2ncm
Family 1hnf
Family 1vcaA
1wit 1 .......lkpkiltas.rkikikaGFTHNLEVDFIGapd..PTATWtvgd
cpsf_chick 1 .......ldcsgkaae.ntivvvaGNKVRLDVPISGepa..PTVTWkrg.
cpss_human 1 ......kiilgdldad.ntvtviaGNKLRLEIPISGepp..PKAMWsrg.
myms_human 1 ....knrarvlgglpd..vvtiqeGKALNLTCNVWGdpp..PEVSWlkn.
vca1_mouse 1 ......kettiwvsp...spileeGSPVNLTCSSDGipa..PKILWsrql
1tlk 1 .....hvkpyftkti..ldmdvveGSAARFDCKVEGypd..PEVMWfkd.
cavt_brala 1 ...keksipkfsqvl..kdmfvmeGSAVTFFARVWGipd..PVIKWfkd.
dcc_human 1 aeltvlvppwflnhp..snlyayeSMDIEFECTVSGkpv..PTVNWmkn.
ptpf_human 1 agahgdskpvfikvp..edqtglsGGVASFVCQATGepk..PRITWmkk.
mpsf_human 1 ....knrgrligglp..dvvtimeGKTLNLTCTVFGnpd..PEVIWfkn.
pgbm_mouse 1 .....qalpqistpp...eirvpaGSAAVFPCMASGypt..PAITWskv.
iml2_drome 1 .......kprivyte..kthldlmGSNIQLPCRVHArpr..AEITWlnne
vgr2_mouse 1 ....ermapmitgnl..enqtttiGETIEVTCPASGnpt..PHITWfkd.
nca2_xenla 1 .....ppliqarqir..vnatanmDESVVLSCDADGfpd..PEISWlkk.
axo1_chick 1 .....haqpdwldvi..tdteadiGSDLRWSCVASGkpr..PAVRWlrd.
nrg_drome 1 ylnvqaepptiseap..aavstvdGRNVTIKCRVNGspk..PLVKWlra.
caml_rat 1 .......fptnsss....hlvalqGQSLILECIAEGfpt..PTIKWlhp.
cont_mouse 1 ......laptfemnpmkkkilaakGGRVIIECKPKAapk..PKFSWskg.
lar_drome 1 ........peiirkp..qnqgvrvGGVASFYCAARGdpp..PSIVWrkn.
2ncm 1 ......rvlqvdivps..qgeisvGESKFFLCQVAGdakd.KDISWfspn
1hnf 1 .......avskeitna.letwgalGQDINLDIPSFQmsddiDDIKWekts
1vcaA 1 ........fkiettpe.srylaqiGDSVSLTCSTTGc..esPFFSWrtqi
1wit 41 sgaalap............ellvdakss.TTSIFFPSAK.RADSGNYKLK
cpsf_chick 40 .dqlfta.........tegrvhidsqad.LSSFVIESAE.RSDEGRYCIT
cpss_human 41 .dkaime.........gsgrirtesypd.SSTLVIDIAE.RDDSGVYHIN
myms_human 42 .ekalaq........tdhcnlkfeagr..TAYFTINGVS.TADSGKYGLV
vca1_mouse 40 nngelqp..............lse.....NTTLTFMSTK.RDDSGIYVCE
1tlk 41 .dnpvke..........srhfqidydeegNCSLTISEVC.GDDDAKYTCK
cavt_brala 43 .gqevkq..........gpkheikfddkdGTFLIIRNAD.GDDVGTYTCQ
dcc_human 46 .gdvvip.........sdyfqivg.....GSNLRILGVV.KSDEGFYQCV
ptpf_human 46 .gkkvss..........qrfeviefddgaGSVLRIQPLRVQRDEAIYECT
mpsf_human 42 .dqdiql........sehfsvkveqak..YVSMTIKGVT.SEDSGKYSIN
pgbm_mouse 40 .dgdlpp............dsrle.....NNMLMLPSVR.PEDAGTYVCT
iml2_drome 40 .nkeivq.........ghrhrvla.....NGDLLISEIK.WEDMGNYKCI
vgr2_mouse 42 .netlve..........dsgivlrdg...NRNLTIRRVR.KEDGGLYTCQ
nca2_xenla 41 .gepied..........geekisfned..KSEMTIYRVE.KEDEAEYSCI
axo1_chick 41 .gqplas............qnrievs...GGELRFSKLV.LEDSGMYQCV
nrg_drome 46 .snwltg...........grynvqa....NGDLEIQDVT.FSDAGKYTCY
caml_rat 37 .sdpmpt...........drviyqnh...NKTLQLLNVG.EEDDGEYTCL
cont_mouse 42 .tewlvn.........ssriliwe.....DGSLEINNIT.RNDGGIYTCF
lar_drome 38 .gkkvsg........tqsrytvleqpgg.ISILRIEPVRAGRDDAPYECV
2ncm 42 .geklsp........nqqrisvvwnddd.SSTLTIYNAN.IDDAGIYKCV
1hnf 43 dkkkiaqfrkeketfkekdtyklfk....NGTLKIKHLK.TDDQDIYKVS
1vcaA 40 .dsplng............kvtnegt...TSTLTMNPVSFGNEH.SYLCT
1wit 77 VKNELG.EDEAIFEVIVq..
cpsf_chick 78 VTNPVG.EDSATLHVRV...
cpss_human 79 LKNEAG.EAHASIKVKV...
myms_human 80 VKNKYG.SETSDFTVSV...
vca1_mouse 70 GINEAG.ISRKSVELII...
1tlk 79 AVNSLG.EATCTAELLVetm
cavt_brala 81 ATNSFG.EAFDSARLALe..
dcc_human 80 AENEAG.NAQTSAQLIVp..
ptpf_human 85 ATNSLG.EINTSAKLSV...
mpsf_human 80 IKNKYG.GEKIDVTVSV...
pgbm_mouse 71 ATNRQG.KVKAFAYLQVpe.
iml2_drome 74 ARNVVG.KDTAD.TFVYp..
vgr2_mouse 77 ACNVLG.CARAETLFIIe..
nca2_xenla 77 ANNQAG.EAEAIVLLKV...
axo1_chick 74 AENKHG.TVYASAELTVqa.
nrg_drome 79 AQNKFG.EIQADGSLVVke.
caml_rat 71 AENSLG.SARHAYYVTVe..
cont_mouse 76 AENNRG.KANSTGTLVIt..
lar_drome 78 AENGVGDAVSADATLTIy..
2ncm 81 VTAEDGTQSEATVNVKIfq.
1hnf 88 IYDTKGKNVLEKIFDLKiq.
1vcaA 73 ATCES.RKLEKGIQVEIy..
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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