1ar1 - reference 4
Name cytochrome c oxidase
Number of sequences 9
Alignment Length 412
Longest Sequence 372
Shortest Sequence 164
Average Percent Identity 30
Maximum Percent Identity 44
Minimum Percent Identity 6
Sequence Name SWISSPROT Accession
hv54_mouse P18525
kv5i_mouse P01642
hv1g_human P23083
hv1c_human P01744
cox1_albtu Q09333
hv1f_human P06326
cox2_cyaca P48870
cox1_halha P33518
2BRD P02945
Family hv54_mouse kv5i_mouse hv1g_human hv1c_human cox1_albtu hv1f_human cox2_cyaca cox1_halha
hv54_mouse 1 ..................................................
kv5i_mouse 1 ..................................................
hv1g_human 1 ..................................................
hv1c_human 1 ..................................................
cox1_albtu 1 ..................................................
hv1f_human 1 ..................................................
cox2_cyaca 1 igfqdpatpimegivnlhhdiiffliiiiifvswilfrtlflfnsktnpv
cox1_halha 1 ..................................................
2BRD 1 ..................................................
hv54_mouse 1 ..................................................
kv5i_mouse 1 ..................................................
hv1g_human 1 ..................................................
hv1c_human 1 ..................................................
cox1_albtu 1 ..................................................
hv1f_human 1 ..................................................
cox2_cyaca 51 aynfshgtfiellwtltpslvligiavpsfallysideiidpaitikavg
cox1_halha 1 ..................................................
2BRD 1 ..................................................
hv54_mouse 1 ..................................................
kv5i_mouse 1 ..................................................
hv1g_human 1 ..................................................
hv1c_human 1 ..................................................
cox1_albtu 1 ..................................................
hv1f_human 1 ..................................................
cox2_cyaca 101 rqwywsyeysdyvneeneflafhsyilpeedlelgqfrllevdnriiipv
cox1_halha 1 ..................................................
2BRD 1 ..................................................
hv54_mouse 1 ..............................................gfft
kv5i_mouse 1 ................................................mm
hv1g_human 1 ..................................................
hv1c_human 1 ...............................................wyd
cox1_albtu 1 ..................................................
hv1f_human 1 ..................................................
cox2_cyaca 151 nthiriivtgadvihswavpslgvkcdaipgrlnqisffikregiyywwt
cox1_halha 1 ...............................................lwk
2BRD 1 ........xaqitgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkf
hv54_mouse 5 rwfmSTNHKDIGVLYLFTAGLAGLISVTLTVYMRMELQHPGVqymclegm
kv5i_mouse 3 kwfmSTNHKNIGILYIILALWSGMLGSSMSLIIRMELSSPGSwis.....
hv1g_human 1 .wltTVDHKKIAIMYLIAGTLFFVKAGVMALFMRIQLMYPEMnfl.....
hv1c_human 4 yftfNVDHKVIGIQYLVTAFIFYLIGGLMAVAMRTELATADSdfl.....
cox1_albtu 1 ..ltTVDHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNqfl.....
hv1f_human 1 ...lSVSHKMIGMCYLLVAILCGFLGYIYSLFIRLELSIIGCgvl.....
cox2_cyaca 201 ryvfSQDAKVIAIQYSLTASAIGLVALVLSWLMRLQLGFPGTfsf.....
cox1_halha 4 ewltSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAgea.....
2BRD 43 yaittlvpaiaftmylsmllgygltmvpfggeqnpiywaryadwl.fttp
hv54_mouse 55 rlvadaaaectpnahlwnvvvtyhgilmmffvvipalfggfgnyfmplhi
kv5i_mouse 48 ............ndqiyntivtshaflmiffmvmpfliggfgnwliplml
hv1g_human 45 ............sgqtfnefitmhgtimlflaatpllf.afmnyviplqi
hv1c_human 49 ............dpnlynafltnhgtimiflwvvpaaiggfgnylvplmi
cox1_albtu 44 ............tgeqynqiltlhgatmlfffiiqagltgfgnfvvplml
hv1f_human 43 ..........fgdyqyynvlvtthglvmvfafimpvmmgglvnyfvpvls
cox2_cyaca 246 ...........idanqylqfitmhgmimviylltalflggfgnyliplmv
cox1_halha 49 .........gflpphhydqiftahgvimiffvampfvi.glmnlvvplqi
2BRD 92 lllldlallvdadqgtilalvgadgimigtglvgaltkvysyrfvwwais
hv54_mouse 105 gapdmafprlnnlsywlyvcgvslaiasllspggsdqpgagvgwvlyppl
kv5i_mouse 86 gspdmafprmnnisfwllppslfmlllsnlfyps.....pgtgwtvyppl
hv1g_human 82 gardvafpfvnalgfwifffgglllslswffggg.....pdagwtayvpl
hv1c_human 87 gardmafprlnalafwlnppagalllasflfgga......qagwtsyppl
cox1_albtu 82 gardvalprvnafsywaflgaivlalmsyffpgg....apsvgwtfyypf
hv1f_human 83 gfpdmvfprlnnmsfwmfmggfgalvsgllteeg.....mgigwtmyptl
cox2_cyaca 285 gardmvfpyvnmlsywvyllavlvlasaffvpgg....ptgagwtlyppq
cox1_halha 89 gardvafpflnnlsfwftvvgvilvnvslgvgef.....aqtgwlayppl
2BRD 142 taamlyilyvlffgftskaesmrpevastfkvlrnv...tvvlwsaypvv
hv54_mouse 155 stte....agyamdlaifavhvsgatsilgainiittflnmr........
kv5i_mouse 131 sayl..yhsspsvdfaifslhmsgissimgslnlmvtimmmk........
hv1g_human 127 ssrd...ygglgidfyvlglqvsgigtlisainflvtivnmr........
hv1c_human 131 stit....attaqsmwilaiilvgtssilgsvnfivtiwkmk........
cox1_albtu 128 saq.....sesgvdfylaailllgfssllgnanfvatiynlr........
hv1f_human 128 icvd..fhsslacdftvfavhllgvssilnsinllgtlfccr........
cox2_cyaca 331 ailsgtpgqdwgivlmlsslilfiigftmgglnyvvtvlqar........
cox1_halha 134 sgie..yspgvgvdywiwslqlsgigttltginffvtilkmr........
2BRD 189 wlig...segagivplnietllfmvldvsakvgfglillrsraifgeaea
hv54_mouse 193 ............
kv5i_mouse 171 ............
hv1g_human 166 ............
hv1c_human 169 ............
cox1_albtu 165 ............
hv1f_human 168 ............
cox2_cyaca 373 ............
cox1_halha 174 ............
2BRD 236 pepsadgaaats
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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