1idy - reference 3


Name                 dna binding										

Number of sequences              27
Alignment Length                 62
Longest Sequence                 58
Shortest Sequence                49
Average Percent Identity         19
Maximum Percent Identity         81
Minimum Percent Identity         1

Sequence Name    SWISSPROT Accession
1idy                 P06876         
mybp_maize           P27898         
myb3_maize           P20025         
gl1_arath            P27900         
myb3_horvu           P20027         
myb2_phypa           P80073         
1hstA                P02259         
h1d_strpu            P15870         
h1b_strpu            P15869         
h1_tigca             P35060         
h1l_myttr            Q05831         
h1_echcr             P02257         
h11_caeel            P10771         
h1a_pladu            P06894         
h11_arath            P26568         
h1_dicdi             P54671         
1aoy                 P15282         
ARGR_STRCL           P95721         
G3273713             G3273713       
AHRC_BACSU           P17893         
ARGR_BACST           O31408         
ARGR_STRPN           Q54870         
ARGR_MYCTU           P94992         
1jhgA                P03032         
TRPR_HAEIN           P44889         
G3328572             G3328572       
1tc3C                P34257         

Family   1idy mybp_maize myb3_maize gl1_arath myb3_horvu myb2_phypa
Family   1hstA h1d_strpu h1b_strpu h1_tigca h1l_myttr h1_echcr h11_caeel h1a_pladu h11_arath h1_dicdi
Family   1aoy ARGR_STRCL G3273713 AHRC_BACSU ARGR_BACST ARGR_STRPN ARGR_MYCTU
Family   1jhgA TRPR_HAEIN G3328572
Family   1tc3C


1idy         1  mevkktswteeedrILYQAhkrlgnRWAEIAKLLp........grtdnaI
mybp_maize   1  advkrgniskeeedIIIKLhatlgnRWSLIASHLp........grtdneI
myb3_maize   1  .dlkrgnftadeddLIVKLhsllgnKWSLIAARLp........grtdneI
gl1_arath    1  .nvnkgnfteqeedLIIRLhkllgnRWSLIAKRVp........grtdnqV
myb3_horvu   1  .dlkrgcfsqqeedHIVALhqilgnRWSQIASHLp........grtdneI
myb2_phypa   1  .dlkrgifseaeenLILDLhatlgnRWSRIAAQLp........grtdneI
1hstA        1  ...shptysemiaaAIRAEksrggsSRQSIQKYIkshykvgh..nadlqI
h1d_strpu    1  ...shpkysdmiasALESLkekkgsSRQAILKYVkanftvgd..nanvhI
h1b_strpu    1  ...ahpsssemvlaAITALkerggsSAQAIRKYIeknytvdi.kkqaifI
h1_tigca     1  ...thpptsvmvmaAIKALkerngsSLPAIKKYIaanykvdv.vknahfI
h1l_myttr    1  ....kpstlsmivaAITAMknrkgsSVQAIRKYIlannkgintshlgsaM
h1_echcr     1  ...ahppvidmitaAIAAQkerrgsSVAKIQSYIaakyrcdi.nalnphI
h11_caeel    1  ...ahppyintikeAIKQLkdrkgaSKQAILKFIsqnyklgd...nviqI
h1a_pladu    1  ...ahppvatmvvtAILGLkerkgsSMVAIKKYIaanyrv.....dvarL
h11_arath    1  ...shptyeemikdAIVTLkertgsSQYAIQKFIeekrkelp.ptfrklL
h1_dicdi     1  ...nhptyqvmistAIAHYkdrtgsSQPAIIKYIeanynvap.dtfktqL
1aoy         1  .mrssakqeelvkaFKALLkeekfsSQGEIVAALqeq.gfd..ninqskV
ARGR_STRCL   1  ........marhrrIVDILnrqpvrSQSQLAKLLadn.gls...vtqatL
G3273713     1  enlnpvtrtarqalILQILdkqkvtSQVQLSELLlde.gid...itqatL
AHRC_BACSU   1  .....mnkgqrhikIREIItsneieTQDELVDMLkqd.gyk...vtqatV
ARGR_BACST   1  .....mnkgqrhikIREIImsndieTQDELVDRLrea.gfn...vtqatV
ARGR_STRPN   1  .....mrkrdrhqlIKKMIteeklsTQKEIQDRLeah.nvc...vtqttL
ARGR_MYCTU   1  gpevaanragrqarIVAILssaqvrSQNELAALLaae.gie...vtqatL
1jhgA        1  tpderealgtrvriIEELLrge..mSQRELKNELg.........agiatI
TRPR_HAEIN   1  taderdavglrlqiVSQLIdkn..mPQREIQQNLn.........tsaatI
G3328572     1  sfserkdvasryhiIRALLege..lTQREIAEKYg.........vsiaqI
1tc3C        1  rgsalsdteraqldVMKLLn....vSLHEMSRKIs.........rsrhcI

1idy        43  KNHWNSTmrrkv
mybp_maize  43  KNYWNSHlsrq.
myb3_maize  42  KNYWNTHvrrk.
gl1_arath   42  KNYWNTHlskk.
myb3_horvu  42  KNFWNSCikkk.
myb2_phypa  42  KNYWNTRlkkr.
1hstA       46  KLSIRRLlaagv
h1d_strpu   46  KQALKRGvtsgq
h1b_strpu   47  KRALITGvekgt
h1_tigca    47  KKALKSLvekkk
h1l_myttr   47  KLAFAKGlksgv
h1_echcr    47  RRALKNQvksga
h11_caeel   45  NAHHRQAlkrgv
h1a_pladu   43  APFIRKFirka.
h11_arath   47  LLNLKRLvasgk
h1_dicdi    47  KLALKRLvakgt
1aoy        47  SRMLTKFgavrt
ARGR_STRCL  39  SRDLDELgavki
G3273713    47  SRDLDELgarkv
AHRC_BACSU  42  SRDIKELhlvkv
ARGR_BACST  42  SRDIKEMqlvkv
ARGR_STRPN  42  SRDLREIgltkv
ARGR_MYCTU  47  SRDLEELgavkl
1jhgA       40  TRGSNSLkaapv
TRPR_HAEIN  40  TRGSNMIktmdp
G3328572    40  TRGSNALkgldp
1tc3C       38  RVYLKDPvsygt

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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