1gpb - reference 1


Name                 glycogen phosphorylase b										

Number of sequences              5
Alignment Length                 854
Longest Sequence                 828
Shortest Sequence                796
Average Percent Identity         47
Maximum Percent Identity         61
Minimum Percent Identity         43

Sequence Name    SWISSPROT Accession
gpb                  P00489         
ahpA                 P00490         
ygpA                 P06738         
phsg_ecoli           P13031         
phsg_haein           P45180         

Family   gpb ahpA ygpA phsg_ecoli phsg_haein


gpb          1  .agvenvtelkknFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVgr.
ahpA         1  sqpifndkqfqeaLSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRaqp
ygpA         1  vkkfnkaedfqdrFIDHVETTLARSLYNCDDMVAYEAASMSIRDNLVid.
phsg_ecoli   1  .....svealkhsIAYKLMFTIGKDPVVANKHEWLNATLFAVRDRLVer.
phsg_haein   1  ......veaikksIVYKLIFLIGRSPREASQRDWLNATLHAVRDLVTeg.

gpb         49  wirtqqhyyekdpkriyYLSLEFYMGRTLQNTMVNLAL.ENACDEATYQL
ahpA        51  fakpvanq.....rhvnYISMEFLIGRLTGNNLLNLGW.YQDVQDSLKAY
ygpA        50  wnktqqkfttrdpkrvyYLSLEFLMGRALDNALINMKIPREMIKGALDEL
phsg_ecoli  45  wlrsnraqlsqetrqvyYLSMEFLIGRTLSNAMLSLGI.YEDVQGALEAM
phsg_haein  44  wittarqtraedsrrvyYLSMEFLIGRTLSNAMIAEGI.YGLAQEALSEL

gpb         98  GLDMEELEEiee.DAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFG
ahpA        95  DINLTDLLE.eeiDPALGAGGLGRLAACFLDSMATVGQSATGYGLNYQYG
ygpA       100  GFKLEDVLD.qepDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYG
phsg_ecoli  94  GLNLEELID.eenDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYG
phsg_haein  93  NVDLEEVLE.kevDPGLGNGGLGRLAACFMDSIATLGLPGMGYGIRYEYG

gpb        147  IFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVehts..qg
ahpA       144  LFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGAVtkdg....
ygpA       149  IFAQKIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYVdrpttlsa
phsg_ecoli 143  MFKQNIVNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIqqeg..kk
phsg_haein 142  MFRQKIENGQQVERPDAWLEKGAPWEFIRPSKRFTVEFGGNIhfeg..kk

gpb        195  akWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPNDFNLKDFNVGGY
ahpA       190  .rWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDF
ygpA       199  sqWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQARPTTEFDLNKFNNGDY
phsg_ecoli 191  trWIETEEILGVAYDQIIPGYDTDATNTLRLWSAQASSEINLGKFNQGDY
phsg_haein 190  ciWQDTEKVTALAYDQMIPGYQNNSAATLRLWSAHAGEVFNLADFNRGEH

gpb        245  IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK
ahpA       239  LRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHH
ygpA       249  KNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFK
phsg_ecoli 241  FAAVEDKNHSENVSRVLYPDDSTYSGRDVRLRQEYFLVSSTIQDILSRHY
phsg_haein 240  LAALEEHSANKNLSRVLYPDDSTWNGRELRLRQEYFLVSASLQDILRRHK

gpb        295  SSkfgcrdpvrtnFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD
ahpA       289  LAg........reLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWD
ygpA       299  KSk........rpWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWH
phsg_ecoli 291  QLh........ktYDNLADKIAIHLNDTHPVLSIPEMMRLLIDEHQFSWD
phsg_haein 290  RTh........nsLENLADKVAIHLNDTHPALAIPELMRILVDDEGFEWK

gpb        345  KAWEVTVKTCAYTNHTVIPEALERWPVHLLETLLPRHLQIIYEINQRFLN
ahpA       331  DAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKT
ygpA       341  EAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLE
phsg_ecoli 333  DAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLK
phsg_haein 332  KAWEMTRNIFSYTCHTLMSEALETWPVEMMAKILPRHLQMIFEINDHFLE

gpb        395  RVAAAFPGDVDRLRRMSLVEEga.vKRINMAHLCIAGSHAVNGVARIHSE
ahpA       381  LVEKTWPGDEKVWAKLAVVHD....KQVHMANLCVVGGFAVNGVAALHSD
ygpA       391  DVAKKFPKDVDLLSRISIIEEnspeRQIRMAFLAIVGSHKVNGVVELHSE
phsg_ecoli 383  TLQEQYPNDTDLLGRASIIDEsn.gRRVRMAWLAVVVSHKVNGVSELHSN
phsg_haein 382  YVRTYVTTDNDFIRRVSLIEEgy.qRKVRMGWLSVVGSHKINGVAEIHSD

gpb        444  ILKKTIFKDFYELE.PHKFQNKTNGITPRRWLVLCNPGLAEIIAERIg..
ahpA       427  LVVKDLFPEYHQLW.PNKFHNVTNGITPRRWIKQCNPALAALLDKSLq..
ygpA       441  LIKTTIFKDFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLndp
phsg_ecoli 432  LMVQSLFADFAKIF.PGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLg..
phsg_haein 431  LMVTSTFADFARIF.PERFTNVTNGITPRRWLAVANPQLAALFDKYIg..

gpb        491  .eEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREy.kvh
ahpA       474  .kEWANDLDQLINLVKLADDAKFRDLYRVIKQANKVRLAEFVKVRt.gid
ygpA       491  teEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKEndgvd
phsg_ecoli 479  .rNWRTDLSLLNELQQHCDFPMVNHAVHQAKLENKKRLAEYIAQQl.nvv
phsg_haein 478  .sEWRCDLSQIEKLKPFAQEKAFKEAVADIKFANKVKLAEYVKSEl.gve

gpb        539  .inp....nSLFDVQVKRIHEYKRQLLNCLHVITLYNRIkk........e
ahpA       522  .inp....qAIFDIQIKRLHEYKRQHLNLLRILALYKEIre........n
ygpA       541  iinreylddTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMknmlkngasie
phsg_ecoli 527  .vnp....kALFDVQIKRIHEYKRQLMNVLHVITRYNRIka........d
phsg_haein 526  .ldp....hALFDVQVKRIHEYKRQMLNVLHIIARYNEMlt........n

gpb        576  pnkfvvPR.TVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRV
ahpA       559  pqadrvPR.VFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKV
ygpA       591  evarkyPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKV
phsg_ecoli 564  pdakwvPR.VNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV
phsg_haein 563  pekdwqPR.VFILAGKAASAYYAAKQTIHLINDVANVINNDERLKGRLKV

gpb        625  IFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTM
ahpA       608  VFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTL
ygpA       641  VFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTV
phsg_ecoli 613  VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTL
phsg_haein 612  VFIPNYSVSLAQLIIPAADISEQISLAGTEASGTSNMKFALNGALTLGTL

gpb        675  DGANVEMAEEAGEENFFIFGMRVEDVDRLdqrgynaqEYYDRi..pELRQ
ahpA       658  DGANVEIAEKVGEENIFIFGHTVKQVKAIlakgydpvKWRKKd..kVLDA
ygpA       691  DGANVEITREIGEDNVFLFGNLSENVEELr...ynh.QYHPQdlpsSLDS
phsg_ecoli 663  DGANVEMLDHVGADNIFIFGNTAEEVEELrrqgykprEYYEKd..eELHQ
phsg_haein 662  DGANVEILENVGEDNIFIFGNTVEQVEQLrregyrsfEYYQNd..aQLRT

gpb        723  IIEQLSSGFFSPKQPDLFKDIVNMLmhh..DRFKVFADYEEYVKCQERVS
ahpA       706  VLKELESGKYSDGDKHAFDQMLHSIgkqggDPYLVMADFAAYVEAQKQVD
ygpA       737  VLSYIESGQFSPENPNEFKPLVDSIkyhg.DYYLVSDDFESYLATHELVD
phsg_ecoli 711  VLTQIGSGVFSPEDPGRYRDLVDSLinfg.DHYQVLADYRSYVDCQDKVD
phsg_haein 710  VVDQIIEGKFSPEDPQRYHQLLQGLqyh..DYYQAFADFRSYVETQKAVD

gpb        771  ALYKNPR.EWTRMVIRNIATSGKFSSDRTIAQYAREIWgvepsrqrlpap
ahpA       756  VLYRDQE.AWTRAAILNTARCGMFSSDRSIRDYQARIWqaar........
ygpA       786  QEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWnvepv.......
phsg_ecoli 760  ELYELQE.EWTAKAMLNIANMGYFSSDRTIKEYADHIWhidpvr......
phsg_haein 758  EKYKQRD.QWIESTIQNIVNMGFFSSDRTIKEYAERIWkvepvq......

gpb        820  deki
ahpA       797  ....
ygpA       829  ....
phsg_ecoli 803  ....
phsg_haein 801  ....

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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