1hfh - reference 1


Name                 factor h					

Number of sequences              5
Alignment Length                 142
Longest Sequence                 132
Shortest Sequence                116
Average Percent Identity         31
Maximum Percent Identity         36
Minimum Percent Identity         25

Sequence Name    SWISSPROT Accession
cfah_human           P08603         
cr1_human            P17927         
cr2_human            P20023         
cfhd_human           Q02985         
1vvc                 P10998         

Family   cfah_human cr1_human cr2_human cfhd_human 1vvc


cfah_human   1  ekipCSQPPQIEHGtinssrssqesyahGTKLSYTCEGGFRIS.eene..
cr1_human    1  .rksCGPPPEPFNGmvhintdtq....fGSTVNYSCNEGFRLI.gsps..
cr2_human    1  ..leCPALPMIHNGhhtsenvgs..iapGLSVTYSCESGYLLV.geki..
cfhd_human   1  ...tCSKSDEIENGfisesssi...yilNKEIQYKCKPGYATAdgnsgsi
1vvc         1  ..vkCQSPPSISNGrhngyedf...ytdGSVVTYSCNSGYSLI.gnsg..

cfah_human  48  ttc.ymgkws....SPPQCEg..LPCKSPPEISHGvvah.msdsyqygee
cr1_human   43  ttclvsgnntwdkkVAPICEi..ISCEPPPTISNGdfysnrntsfhngtv
cr2_human   44  incslsgkwsv...APPTCEe..ARCKSLGRFPNGkvke..ppilrvgvt
cfhd_human  45  stc.lrngws....AQPICInseSKCGPPPPISNGdttfsllkvyvpqsr
1vvc        43  vlc.sggews....DPPTCQi..VKCPH.PTISNGylssgfkrsysyndn

cfah_human  90  vtykcfe......GFGIDGPAIAKC.....lgekWSH.PPSC
cr1_human   91  vtyqchtpdgeqlGFELVGERSIYCskddqvtgvWSSPPPRC
cr2_human   87  anffcde......GYRLQGPPSSRCiag.qvgvaWTK.MPVC
cfhd_human  90  veyqcqs......YYELQGSNYVTC.....sngeWSA.PPRC
1vvc        85  vdfkcky......GYKLSGSSSSTCs....pgntWKPELPKC

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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