1idy - reference 2
Name dna binding
Number of sequences 22
Alignment Length 63
Longest Sequence 60
Shortest Sequence 49
Average Percent Identity 28
Maximum Percent Identity 60
Minimum Percent Identity 4
Sequence Name SWISSPROT Accession
1hstA P02259
h1d_strpu P15870
h1b_strpu P15869
h1_tigca P35060
h1l_myttr Q05831
h1_echcr P02257
h11_caeel P10771
h1a_pladu P06894
h1_dicdi P54671
h1_wheat P27806
h12_caeel P15796
h1l_yeast P53551
h1_pea P08283
h11_glysa P40266
h1b_xenla P06893
b4_xenla P15308
h11_volca Q08864
h1_lycpn P40267
1tc3C P34257
1aoy P15282
1idy P06876
1jhgA P03032
Family 1hstA h1d_strpu h1b_strpu h1_tigca h1l_myttr h1_echcr h11_caeel h1a_pladu h1_dicdi h1_wheat h12_caeel h1l_yeast h1_pea h11_glysa h1b_xenla b4_xenla h11_volca h1_lycpn
Family 1tc3C
Family 1aoy
Family 1idy
Family 1jhgA
1hstA 1 ...shptysEMIAAAIRAEKsrggssrqsIQKYIkshykvg...hnadlq
h1d_strpu 1 ...shpkysDMIASALESLKekkgssrqaILKYVkanftvgd...nanvh
h1b_strpu 1 ...ahpsssEMVLAAITALKerggssaqaIRKYIeknytvdi..kkqaif
h1_tigca 1 ...thpptsVMVMAAIKALKerngsslpaIKKYIaanykvdv..vknahf
h1l_myttr 1 ....kpstlSMIVAAITAMKnrkgssvqaIRKYIlannkgin.tshlgsa
h1_echcr 1 ...ahppviDMITAAIAAQKerrgssvakIQSYIaakyrcdi..nalnph
h11_caeel 1 ...ahppyiNTIKEAIKQLKdrkgaskqaILKFIsqnyklgd....nviq
h1a_pladu 1 ...ahppvaTMVVTAILGLKerkgssmvaIKKYIaanyrvdv......ar
h1_dicdi 1 ...nhptyqVMISTAIAHYKdrtgssqpaIIKYIeanynvap..dtfktq
h1_wheat 1 ...ahpsyaEMVSEAIAALKersgsstiaIGKFIedkheahl.panfrki
h12_caeel 1 ...ahppfiNMIKEAIKQLKerkgsskiaILKYItanykvgdqltrinsr
h1l_yeast 1 ...ssksyrELIIEGLTALKerkgssrpaLKKFIkenypivgsasnfdly
h1_pea 1 ...shptyeEMIKDAIVSLKekngssqyaIAKFIeekqkqlp..anfkkl
h11_glysa 1 ...thppvsEMVVNALKTLNekggssviaIKKFLvatykvei..ekllpf
h1b_xenla 1 ...sgpsasELIVKAVSSSKersgvslaaLKKALaaggydvd...knnsr
b4_xenla 1 ...shpptlSMVVEVLKKNTerkgtsvqaIRTRIlsahptvd.....plr
h11_volca 1 ...thppyiEMVKDAITTLKerngsslpaLKKFIenkygkdi....hdkn
h1_lycpn 1 ...thppyfQMIKEALLALNekggsspyaVAKYMedkhkdel.panfrki
1tc3C 1 rgsalsdteRAQLDVMKLLN....vslheMSRKIs..........rsrhc
1aoy 1 .mrssakqeELVKAFKALLKeekfssqgeIVAALqeq.gfd...ninqsk
1idy 1 mevkktswtEEEDRILYQAHkrlgnrwaeIAKLLp.........grtdna
1jhgA 1 tpderealgTRVRIIEELLRge..msqreLKNELg..........agiat
1hstA 45 IKLSIRRLLaagv
h1d_strpu 45 IKQALKRGVtsgq
h1b_strpu 46 IKRALITGVekgt
h1_tigca 46 IKKALKSLVekkk
h1l_myttr 46 MKLAFAKGLksgv
h1_echcr 46 IRRALKNQVksga
h11_caeel 44 INAHHRQALkrgv
h1a_pladu 42 LAPFIRKFIrka.
h1_dicdi 46 LKLALKRLVakgt
h1_wheat 47 LLTQIKKLVaagk
h12_caeel 48 LRAALNKGVaska
h1l_yeast 48 FNNAIKKGVeagd
h1_pea 46 LLQNLKKNVasgk
h11_glysa 46 IKKFLKGAVlkge
h1b_xenla 45 LKLALKALVtkgt
b4_xenla 43 LKFLLRTALnkgl
h11_volca 44 FAKTLSQVVktf.
h1_lycpn 47 LGLQLKNSAakgk
1tc3C 37 IRVYLKDPVsygt
1aoy 46 VSRMLTKFGavrt
1idy 42 IKNHWNSTMrrkv
1jhgA 39 ITRGSNSLKaapv
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
Back to Index