1havA - reference 2


Name                 proteinase HAV										

Number of sequences              19
Alignment Length                 272
Longest Sequence                 242
Shortest Sequence                145
Average Percent Identity         29
Maximum Percent Identity         79
Minimum Percent Identity         10

Sequence Name    SWISSPROT Accession
5ptp                 P00760         
1dpo                 P00763         
1trnB                P07477         
1bit                 P35031         
1fxyA                P07477         
1ao5A                P36368         
1fleE                P19957         
1dsuB                P00746         
1faxA                P00742         
1autC                P04070         
1azzB                P00771         
1bthH                P00734         
1danH                P13726         
6chaB                P00766         
1try                 P35049         
1havA                P06441         
1agjA                P09331         
2sga                 P00776         
1svpA                P27285         

Family   5ptp 1dpo 1trnB 1bit 1fxyA 1ao5A 1fleE 1dsuB 1faxA 1autC 1azzB 1bthH 1danH 6chaB 1try
Family   1havA
Family   1agjA
Family   2sga
Family   1svpA


5ptp         1  ..pyqvslns.....GYHFCGGSLIn...sqwVVSAAHcy..........
1dpo         1  ..pyqvslns.....GYHFCGGSLIn...dqwVVSAAHcy..........
1trnB        1  ..pyqvslns.....GYHFCGGSLIn...eqwVVSAGHcy..........
1bit         1  ..ahqvslns.....GYHFCGGSLVn...enwVVSAAHcy..........
1fxyA        1  ..pwqallinee...NEGFCGGTILs...efyILTAAHcl........yq
1ao5A        1  ..pwqvavyyq....KEHICGGVLLd...rnwVLTAAHcy..........
1fleE        1  ..psqislqyrsgssWAHTCGGTLIr...qnwVMTAAHcv........dr
1dsuB        1  ..pymasvqln....GAHLCGGVLVa...eqwVLSAAHcl......edaa
1faxA        1  ..pwqallinee...NEGFCGGTILs...efyILTAAHcl........yq
1autC        1  ..pwqvvlldsk...KKLACGAVLIh...pswVLTAAHcm........de
1azzB        1  ..phqaalfid....DMYFCGGSLIs...pewILTAAHcm........dg
1bthH        1  ..pwqvmlfrksp..QELLCGASLIs...drwVLTAAHcllyppwdknft
1danH        1  ..pwqvlllvn....GAQLCGGTLIn...tiwVVSAAHcf.....dkikn
6chaB        1  ..pwqvslqdkt...GFHFCGGSLIn...enwVVTAAHcg.........v
1try         1  ..pfivsisrn....GGPWCGGSLLn...antVLTAAHcv......sgya
1havA        1  knlvqfgvgekn...GSVRWVMNALgvk.ddwLLVPSHaykfe...kdye
1agjA        1  ntignvfvk......GQTSATGVLIg...kntVLTNRHiakfa.....ng
2sga         1  iaggeaittg.....GSRCSLGFNVsvngvahALTAGHct..........
1svpA        1  ..drlfdvkned...GDVIGHALAMe....gkVMKPLHvk..........

5ptp        31  ksGIQVRLGedninvveg..neqfisasKSIVHPSYn...........sn
1dpo        31  ksRIQVRLGehninvleg..neqfvnaaKIIKHPNFd...........rk
1trnB       31  ksRIQVRLGehnievleg..neqfinaaKIIRHPQYd...........rk
1bit        31  ksRVEVRLGehnikvteg..seqfisssRVIRHPNYs...........sy
1fxyA       35  akRFKVRVGdrnteqeeg..geavheveVVIKHNRFt...........ke
1ao5A       32  vdQYEVWLGknklfqeep..saqhrlvsKSFPHPGFnmsllmlqtippga
1fleE       38  elTFRVVVGehnlnqnng..teqyvgvqKIVVHPYWn.........tddv
1dsuB       36  dgKVQVLLGahslsqpep..skrlydvlRAVPHPDSq...........pd
1faxA       35  akRFKVRVGdrntaaeeg..geavheveVVIKHNRFt...........ke
1autC       35  skKLLVRLGeydlrrwek..weldldikEVFVHPNYs...........ks
1azzB       34  agFVDVVLGahniredea..tqvtiqstDFTVHENYn...........sf
1bthH       44  enDLLVRIGkhsrtryern.iekismleKIYIHPRYn..........wre
1danH       37  wrNLIAVLGehdlsehdg..deqsrrvaQVIIPSTYv...........pg
6chaB       34  ttSDVVVAGefdqgssse..kiqklkiaKVFKNSKYn...........sl
1try        36  qsGFQIRAGslsrtsg.....gitsslsSVRVHPSYs.............
1havA       44  mmEFYFNRGg..........tyysisagNVVIQSLDv.............
1agjA       37  dpSKVSFRPsintddngntetpygeyevKEILQEPFg.............
2sga        36  nisaswsig..................tRTGTSFP...............
1svpA       32  ...gtidhp.............vlsklkFTKSSA................

5ptp        68  tlnnDIMLIKLksaaslnsrVASISLPtsc......asaGTQCLISGWGn
1dpo        68  tlnnDIMLIKLsspvklnarVATVALPssc......apaGTQCLISGWGn
1trnB       68  tlnnDIMLIKLssravinarVSTISLPtap......patGTKCLISGWGn
1bit        68  nidnDIMLIKLskpatlntyVQPVALPtsc......apaGTMCTVSGWGn
1fxyA       72  tydfDIAVLRLktpitfrmnVAPASLPtap......patGTKCLISGWGn
1ao5A       80  dfsdDLMLLRLskpaditdvVKPIALPtke......pkpGSKCLASGWGs
1fleE       77  aagyDIALLRLaqsvtlnsyVQLGVLPragt....ilanNSPCYITGWGl
1dsuB       73  tidhDLLLLQLsekatlgpaVRPLPWQrvdd.....vapGTLCDVAGWGi
1faxA       72  tydfDIAVLRLktpitfrmnVAPACLPerdwaes.tlmtQKTGIVSGFGr
1autC       72  ttdnDIALLHLaqpatlsqtIVPICLPdsglaerelnqaGQETLVTGWGy
1azzB       71  visnDIAVIRLpvpvtltaaIATVGLPstd......vgvGTVVTPTGWGl
1bthH       83  nldrDIALMKLkkpvafsdyIHPVCLPdretaas.llqaGYKGRVTGWGn
1danH       74  ttnhDIALLRLhqpvvltdhVVPLCLPertfser.tlafVRFSLVSGWGq
6chaB       71  tinnDITLLKLstaasfsqtVSAVCLPsasdd....faaGTTCVTTGWGl
1try        68  gnnnDLAILKLstsipsggnIGYARLAasgsd....pvaGSSATVAGWGa
1havA       71  .gfqDVVLMKVptipkfrd.ITQHFIKkgdvpr...alnRLATLVTTVN.
1agjA       74  .agvDLALIRLkpdqngvs.LGDKISPakigtsnd.lkdGDKLELIGYPf
2sga        53  ..nnDYGIIRHsnpaaadgrVYLYNGSyqdittagnafvGQAVQRSGSTt
1svpA       50  ...yDMEFAQL..pvnmrseAFTYT.............sEHPEGFYNWHh

5ptp       112  tkss.....gtsypdvlkclkapilsdsscksayp......gqitsnmfc
1dpo       112  tlss.....gvnepdllqcldapllpqadceasyp......gkitdnmvc
1trnB      112  tass.....gadypdelqcldapvlsqakceasyp......gkitsnmfc
1bit       112  tmss......tadsnklqclnipilsysdcnnsyp......gmitnamfc
1fxyA      116  tass.....gadypdelqcldapvlsqakceasyp......gkitsnmfc
1ao5A      124  itpt......wqkpddlqcvfitllpnencakvyl......qkvtdvmlc
1fleE      123  trtn......gqlaqtlqqaylptvdyaicssssywg....stvknsmvc
1dsuB      118  vnha......grrpdslqhvllpvldratcnrrthhd....gaiterlmc
1faxA      121  thek......grqstrlkmlevpyvdrnscklsss......fiitqnmfc
1autC      122  hssre.keakrnrtfvlnfikipvvphnecsevms......nmvsenmlc
1azzB      115  psdsa.....lgisdvlrqvdvpimsnadcdavy.......givtdgnic
1bthH      132  lketwttnvgkgqpsvlqvvnlpiverpvckdstr......iritdnmfc
1danH      123  lldr......gatalelmvlnvprlmtqdclqqsrkv.gdspniteymfc
6chaB      117  try.......antpdrlqqaslpllsntnckkywg......tkikdamic
1try       114  tseg.....gsstpvnllkvtvpivsratcraqyg.....tsaitnqmfc
1havA      115  .............gtpmlisegplkmeekatyvhk....kndgttvdltv
1agjA      121  dhkv..........nqmhrseielttlsr.................glry
2sga       101  ..........glrsgsvtglnatvnygss.................givy
1svpA       82  .................gavqys......................ggrft

5ptp       151  agyleg...gkdscQGDSGGPVVcs......gkLQGIVSWGs..gcaqkn
1dpo       151  vg.leg....gdscQGDCGGPVVcn......geLQGIVSWGy..gca.pd
1trnB      151  vgfleg...gkdscQGDSGGPVVcn......gqLQGVVSWGd..gcaqkn
1bit       150  agyleg...gkdscQGDSGGPVVcn......geLQGVVSWGy..gcaepg
1fxyA      155  vgfleg...gkdscQGDSGGPVVcn......gqLQGVVSWGd..gcaqkn
1ao5A      162  agemgg...gkdtcRDDSGGPLIcd......giLQGTTSYGp.vpcgkpg
1fleE      163  agg.dg...vrsgcQGDSGGPLHcl..vngqyaVHGVTSFVsrlgcnvtr
1dsuB      158  aesn.....rrdscKGDSGGPLVcg......gvLEGVVTSGsr.vcgnrk
1faxA      159  agydtk...qedacQGDSGGPHVtr..fkdtyfVTGIVSWGe..gcarkg
1autC      165  agilgd...rqdacEGDSGGPMVas..fhgtwfLVGLVSWGe..gcgllh
1azzB      153  idstg....gkgtcNGDSGGPLNyn......glTYGITSFGaaagc.eag
1bthH      176  agykpdegkrgdacQGDSGGPFVmkspfnnrwyQMGIVSWGe..gcdrdg
1danH      166  agysdg...skdscKGDSGGPHAth..yrgtwyLTGIVSWGq..gcatvg
6chaB      154  agas.....gvsscMGDSGGPLVck..kngawtLVGIVSWGs.stcs.ts
1try       154  agvssg...gkdscQGDSGGPIVds.....sntLIGAVSWGn..gcarpn
1havA      148  dqawrg...kgeglPGMCGGALVss.nqsiqnaILGIHVAGg........
1agjA      144  y.........gftvPGNSGSGIFns.....ngeLVGIHSSKv..shldre
2sga       124  gmiqtn....vcaqPGDSGGSLFag......stALGLTSGGs..gncrtg
1svpA       93  iprg.......vggRGDAGRPIMdn.....sgrVVAIVLGGa.....deg

5ptp       190  kpGVYTKVCNYVSWIkqtiasn
1dpo       187  npGVYTKVCNYVDWIqdtiaan
1trnB      190  kpGVYTKVYNYVKWIkntiaan
1bit       189  npGVYAKVCIFNDWLtstmasy
1fxyA      194  kpGVYTKVYNYVKWIkntiaan
1ao5A      202  vpAIYTNLIKFNSWIkdtmmkn
1fleE      207  kpTVFTRVSAYISWInnviasn
1dsuB      196  kpGIYTRVASYAAWIdsvla..
1faxA      202  kyGIYTKVTAFLKWIdrsmktr
1autC      208  nyGVYTKVSRYLDWIhghir..
1azzB      192  ypDAFTRVTYFLDWIqtqtgit
1bthH      224  kyGFYTHVFRLKKWIqkvi...
1danH      209  hfGVYTRVSQYIEWLqklmrse
6chaB      195  tpGVYARVTALVNWVqqtlaan
1try       194  ysGVYASVGALRSFIdtya...
1havA      186  nsILVAKLVT.QEMFqnidk..
1agjA      178  hqINYGVGI..GNYVkriinek
2sga       162  gtTFYQPVTEALSAYgatv...
1svpA      126  trTALSVVTW..NSKgktiktt

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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