1gowA - reference 1


Name                 beta_glycosidase											

Number of sequences              4
Alignment Length                 546
Longest Sequence                 481
Shortest Sequence                451
Average Percent Identity         31
Maximum Percent Identity         43
Minimum Percent Identity         25

Sequence Name    SWISSPROT Accession
1gow                 P22498         
1pbg                 P11546         
1cbg                 P26205         
1myr                 P29092         

Family   1gow 1pbg 1cbg
Family   1myr


1gow         1  .mySFPNSFRFGWSQAGFQSEMGTpgsedpntdWYKWVHD.penmaaglv
1pbg         1  mtkTLPKDFIFGGATAAYQAEGAThtdgkgpvaWDKYLEDnywyta....
1cbg         1  nrsCFAPGFVFGTASSAFQYEGAAfedgkgpsiWDTFTHKypekik.drt
1myr         1  nssSFEADFIFGVASSAYQIEGT...igrglniWDGFTHRypdksgpdhg

1gow        49  sgdlpENGPGYWGNYKTFHDNAQKMGLKIARLNSEWSRQFPNPlprpqnf
1pbg        47  .....EPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG.......
1cbg        50  ng...DVAIDEYHRYKEDIGIMKDMNLDAYRFSISWPRVLPKG.......
1myr        48  ng...DTTCDSFSYWQKDIDVLDELNATGYRFSIAWSRIIPRG.......

1gow        99  deskqdvteveinenelkrldeyaNKDALNHYREIFKDLKSRGL.YFIQN
1pbg        85  ....................ygevNEKGVEFYHKLFAECHKRHVEPFVT.
1cbg        90  ..................klsggvNREGINYYNNLINEVLANGMQPYVT.
1myr        88  ..................krsrgvNQKGIDYYHGLIDGLIKKGITPFVT.

1gow       148  MYHWPLPLWLhdpirvrrgdftgpsgWLSTRTVYEFARFSAYTAWKFDDL
1pbg       114  LHHFDTPEALhsn...........gdFLNRENIEHFIDYAAFCFEEFPE.
1cbg       121  LFHWDVPQALedeyr..........gFLGRNIVDDFRDYAELCFKEFGDR
1myr       119  LFHWDLPQTLqdeye..........gFLDPQIIDDFKDYADLCFEEFGDS

1gow       198  VDEYSTMNEPNVVGGLGYvgvksgfppgylsf.............elsrr
1pbg       152  VNYWTTFNEIGPIGDGQYlvgk..fppg.iky.............dlakv
1cbg       161  VKHWITLNEPWGVSMNAYaygt..fapgrcsdwlklnctggdsgrepyla
1myr       159  VKYWLTINQLYSVPTRGYgsal..dapgrcsptvdpscyagnsstepyiv

1gow       235  amynii..qAHARAYDGIKsvskk...pvgiiyans...sfqpltdk..d
1pbg       186  fqshhnmmvSHARAVKLYKdkgyk..geigvvhalptkypydpenpa..d
1cbg       209  ahyqllahaAAARLYKTKYqasqn..giigitlvsh...wfepaskekad
1myr       207  ahhqll...AHAKVVDLYRknythqggkigptmitr...wflpyndt..d

1gow       275  meavemaendnrwWFFDAIIRGEIT.............rgnekivrddlk
1pbg       232  vraaelediihnkFILDATYLGHYSdktmegvnhilaenggeldlrdedf
1cbg       254  vdaakrgldfmlgWFMHPLTKGRYP............esmrylvrkrlpk
1myr       249  rhsiaatermkqfFL..GWFMGPLT.......ngtypqimidtvgarlpt

1gow       312  ..........GRLDWIGVNYYTRTVVKRtek.....gyvslggyg.hgc.
1pbg       282  qaldaak...DLNDFLGINYYMSDWMQAfd......geteiikyqikgv.
1cbg       292  fsteeskeltGSFDFLGLNYYSSYYAAKapripnarpaiqtdsl.inatf
1myr       290  fspeetnlvkGSYDFLGLNYYFTQYAQPspnpvnatnhtammdagaklty

1gow       345  .ernsvslaglptsdfg.....WEFFPEGLYDVLTKYWNRYhl..yMYVT
1pbg       322  ..grrvapdyvpr.........WIIYPEGLYDQIMRVKNDYpnykkIYIT
1cbg       341  .ehngkplgpmaass......wLCIYPQGIRKLLLYVKNHYnnp.vIYIT
1myr       340  inasghyigplfesdggdgssnIYYYPKGIYSVMDYFKNKYynp.lIYVT

1gow       387  ENGIADDa...........DYQRPYYLVSHVYQVHRAIN.SGADVRGYLH
1pbg       361  ENGLGYKde...fvdntvyDDGRIDYVKQHLEVLSDAIA.DGANVKGYFI
1cbg       383  ENGRNEFndptlslqesllDTPRIDYYYRHLYYVLTAIG.DGVNVKGYFA
1myr       389  ENGISTPgse..nrkesmlDYTRIDYLCSHLCFLNKVIKEKDVNVKGYLA

1gow       425  WSLADNYEWASGFSMRFGLLKVDY.NTKRLYWRPSALVYREIATng
1pbg       407  WSLMDVFSWSNGYEKRYGLFYVDF.DTQERYPKKSAHWYKKLAEtq
1cbg       432  WSLFDNMEWDSGYTVRFGLVFVDFKNNLKRHPKLSAHWFKSFLKk.
1myr       437  WALGDNYEFNNGFTVRFGLSYINWNNVTDRDLKKSGQWYQKFISp.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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