1wit - reference 2


Name                 twitchin		

Number of sequences              22
Alignment Length                 120
Longest Sequence                 106
Shortest Sequence                85
Average Percent Identity         23
Maximum Percent Identity         55
Minimum Percent Identity         10

Sequence Name    SWISSPROT Accession
1wit                 Q23550         
cpsf_chick           P16419         
cpss_human           Q00872         
myms_human           P52179         
vca1_mouse           P29533         
1tlk                 P56276         
cavt_brala           P05548         
dcc_human            P43146         
ptpf_human           P10586         
mpsf_human           P54296         
pgbm_mouse           Q05793         
iml2_drome           Q09024         
vgr2_mouse           P35918         
nca2_xenla           P36335         
axo1_chick           P28685         
nrg_drome            P20241         
caml_rat             Q05695         
cont_mouse           P12960         
lar_drome            P16621         
2ncm                 P13596         
1hnf                 P06729         
1vcaA                P19320         

Family   1wit cpsf_chick cpss_human myms_human vca1_mouse 1tlk cavt_brala dcc_human ptpf_human mpsf_human pgbm_mouse iml2_drome vgr2_mouse nca2_xenla axo1_chick nrg_drome caml_rat cont_mouse lar_drome
Family   2ncm
Family   1hnf
Family   1vcaA


1wit         1  .......lkpkiltas.rkikikaGFTHNLEVDFIGapd..PTATWtvgd
cpsf_chick   1  .......ldcsgkaae.ntivvvaGNKVRLDVPISGepa..PTVTWkrg.
cpss_human   1  ......kiilgdldad.ntvtviaGNKLRLEIPISGepp..PKAMWsrg.
myms_human   1  ....knrarvlgglpd..vvtiqeGKALNLTCNVWGdpp..PEVSWlkn.
vca1_mouse   1  ......kettiwvsp...spileeGSPVNLTCSSDGipa..PKILWsrql
1tlk         1  .....hvkpyftkti..ldmdvveGSAARFDCKVEGypd..PEVMWfkd.
cavt_brala   1  ...keksipkfsqvl..kdmfvmeGSAVTFFARVWGipd..PVIKWfkd.
dcc_human    1  aeltvlvppwflnhp..snlyayeSMDIEFECTVSGkpv..PTVNWmkn.
ptpf_human   1  agahgdskpvfikvp..edqtglsGGVASFVCQATGepk..PRITWmkk.
mpsf_human   1  ....knrgrligglp..dvvtimeGKTLNLTCTVFGnpd..PEVIWfkn.
pgbm_mouse   1  .....qalpqistpp...eirvpaGSAAVFPCMASGypt..PAITWskv.
iml2_drome   1  .......kprivyte..kthldlmGSNIQLPCRVHArpr..AEITWlnne
vgr2_mouse   1  ....ermapmitgnl..enqtttiGETIEVTCPASGnpt..PHITWfkd.
nca2_xenla   1  .....ppliqarqir..vnatanmDESVVLSCDADGfpd..PEISWlkk.
axo1_chick   1  .....haqpdwldvi..tdteadiGSDLRWSCVASGkpr..PAVRWlrd.
nrg_drome    1  ylnvqaepptiseap..aavstvdGRNVTIKCRVNGspk..PLVKWlra.
caml_rat     1  .......fptnsss....hlvalqGQSLILECIAEGfpt..PTIKWlhp.
cont_mouse   1  ......laptfemnpmkkkilaakGGRVIIECKPKAapk..PKFSWskg.
lar_drome    1  ........peiirkp..qnqgvrvGGVASFYCAARGdpp..PSIVWrkn.
2ncm         1  ......rvlqvdivps..qgeisvGESKFFLCQVAGdakd.KDISWfspn
1hnf         1  .......avskeitna.letwgalGQDINLDIPSFQmsddiDDIKWekts
1vcaA        1  ........fkiettpe.srylaqiGDSVSLTCSTTGc..esPFFSWrtqi

1wit        41  sgaalap............ellvdakss.TTSIFFPSAK.RADSGNYKLK
cpsf_chick  40  .dqlfta.........tegrvhidsqad.LSSFVIESAE.RSDEGRYCIT
cpss_human  41  .dkaime.........gsgrirtesypd.SSTLVIDIAE.RDDSGVYHIN
myms_human  42  .ekalaq........tdhcnlkfeagr..TAYFTINGVS.TADSGKYGLV
vca1_mouse  40  nngelqp..............lse.....NTTLTFMSTK.RDDSGIYVCE
1tlk        41  .dnpvke..........srhfqidydeegNCSLTISEVC.GDDDAKYTCK
cavt_brala  43  .gqevkq..........gpkheikfddkdGTFLIIRNAD.GDDVGTYTCQ
dcc_human   46  .gdvvip.........sdyfqivg.....GSNLRILGVV.KSDEGFYQCV
ptpf_human  46  .gkkvss..........qrfeviefddgaGSVLRIQPLRVQRDEAIYECT
mpsf_human  42  .dqdiql........sehfsvkveqak..YVSMTIKGVT.SEDSGKYSIN
pgbm_mouse  40  .dgdlpp............dsrle.....NNMLMLPSVR.PEDAGTYVCT
iml2_drome  40  .nkeivq.........ghrhrvla.....NGDLLISEIK.WEDMGNYKCI
vgr2_mouse  42  .netlve..........dsgivlrdg...NRNLTIRRVR.KEDGGLYTCQ
nca2_xenla  41  .gepied..........geekisfned..KSEMTIYRVE.KEDEAEYSCI
axo1_chick  41  .gqplas............qnrievs...GGELRFSKLV.LEDSGMYQCV
nrg_drome   46  .snwltg...........grynvqa....NGDLEIQDVT.FSDAGKYTCY
caml_rat    37  .sdpmpt...........drviyqnh...NKTLQLLNVG.EEDDGEYTCL
cont_mouse  42  .tewlvn.........ssriliwe.....DGSLEINNIT.RNDGGIYTCF
lar_drome   38  .gkkvsg........tqsrytvleqpgg.ISILRIEPVRAGRDDAPYECV
2ncm        42  .geklsp........nqqrisvvwnddd.SSTLTIYNAN.IDDAGIYKCV
1hnf        43  dkkkiaqfrkeketfkekdtyklfk....NGTLKIKHLK.TDDQDIYKVS
1vcaA       40  .dsplng............kvtnegt...TSTLTMNPVSFGNEH.SYLCT

1wit        77  VKNELG.EDEAIFEVIVq..
cpsf_chick  78  VTNPVG.EDSATLHVRV...
cpss_human  79  LKNEAG.EAHASIKVKV...
myms_human  80  VKNKYG.SETSDFTVSV...
vca1_mouse  70  GINEAG.ISRKSVELII...
1tlk        79  AVNSLG.EATCTAELLVetm
cavt_brala  81  ATNSFG.EAFDSARLALe..
dcc_human   80  AENEAG.NAQTSAQLIVp..
ptpf_human  85  ATNSLG.EINTSAKLSV...
mpsf_human  80  IKNKYG.GEKIDVTVSV...
pgbm_mouse  71  ATNRQG.KVKAFAYLQVpe.
iml2_drome  74  ARNVVG.KDTAD.TFVYp..
vgr2_mouse  77  ACNVLG.CARAETLFIIe..
nca2_xenla  77  ANNQAG.EAEAIVLLKV...
axo1_chick  74  AENKHG.TVYASAELTVqa.
nrg_drome   79  AQNKFG.EIQADGSLVVke.
caml_rat    71  AENSLG.SARHAYYVTVe..
cont_mouse  76  AENNRG.KANSTGTLVIt..
lar_drome   78  AENGVGDAVSADATLTIy..
2ncm        81  VTAEDGTQSEATVNVKIfq.
1hnf        88  IYDTKGKNVLEKIFDLKiq.
1vcaA       73  ATCES.RKLEKGIQVEIy..

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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