1aym3 - reference 1
Name rhinovirus 16 coat protein
Number of sequences 4
Alignment Length 248
Longest Sequence 244
Shortest Sequence 219
Average Percent Identity 32
Maximum Percent Identity 42
Minimum Percent Identity 26
Sequence Name SWISSPROT Accession
1mec3 P12296
1fmd3 P15072
1r1a3 P23008
POLG_HE71M Q66479
Family 1mec3 1fmd3 1r1a3 POLG_HE71M
1mec3 1 sPIPVTIREHAGTWYSTLP...dstVPIYGktpvapanyMVGEYKDFLEI
1fmd3 1 gIFPVACSDGYGNMVTTDP...ktaDPAYGkvynpprtaLPGRFTNYLDV
1r1a3 1 .GLPVYITPGSGQFMTTDDmqspcaLPWYH...ptkeisIPGEVKNLIEM
POLG_HE71M 1 qGFPTELKPGTNQFLTTDDgvsapiLPNFH...ptpcihIPGEVRNLLEL
1mec3 48 AQI.PTFI......gnkmp.navpyieasntavktqplavyqvtlscsc.
1fmd3 48 AEACPTFL.........mf.envpyvstr..tdgqrllakfdvslaakh.
1r1a3 47 CQV.DTLIpvnnvgnnvgn.vsmytvqlgnqtgmaqkvfsikvditstp.
POLG_HE71M 48 CQV.ETILevnnvptnatslmerlrfpvsaqagkgelcavfradpgrdgp
1mec3 89 laNTFLAALSRNFAQYRGSLVYTFVFTGTAMMKGKFLIAYTPPGAGKPTS
1fmd3 85 msNTYLAGLAQYYTQYTGTINLHFMFTGPTDAKARYMVAYVPPGMDAPDN
1r1a3 94 laTTLIGEIASYYTHWTGSLRFSFMFCGTANTTLKLLLAYTPPGIDEPTT
POLG_HE71M 97 wqSTMLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKD
1mec3 139 RDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRmvgtdqanitNVDGWVt
1fmd3 135 PEEAAHCIHAEWDTGLNSKFTFSIPYISAADYTytasheaettCVQGWVc
1r1a3 144 RKDAMLGTHVVWDVGLQSTISLVVPWVSASHFRl...tadnkySMAGYIt
POLG_HE71M 147 RATAMLGTHVIWDFGLQSSVTLVIPWISNTHYRahardgvfdyYTTGLVs
1mec3 189 vwqltpltyppgcptsaKILTMVSAGKDFSLKMPISpapwspq.....
1fmd3 185 vyqith.....gkadadALVVSASAGKDFELRLPVDarqq........
1r1a3 191 cwyqtnlvvppstpqtaDMLCFVSACKDFCLRMARDtdlhiqsgpieq
POLG_HE71M 197 iwyqtnyvvpigapntaYILALAAAQKNFTMKLCKDtshilqtasiqg
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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